Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3261 ATGCCGCCTGAGCTGCGCGCCCGACCACGCAGAAACCGCCTCTTAGAAAACGCGAACCCGTATCCGATCCCTCAGCCAGACTCGCCGGCGGCCGCCGGAGCCCGTCGGAGGAGGAGAACCGCCGCCGCCGCTCCGACAAGGAGGAATCGGAGACAGAACAACGCGATCGGCGCGGATGAAACAGTGAGCGACGACGACGACTACGCTGGTGCCGGTCGTGGAACCAGAGCGAGGAAGTTGAAAGACGAgcaaggacagaagaagaagaagctttCGGTTAGGGTTTTGAAAAAGGAAGCCATGGATGAGTACGATAGTGGTGGCCGCAGCGCCGATAAGGCTCCGGGAGCCGATGACGAGGGCACCACCGCTCCTCTTCCGGAGAAGGTTCAACTTGGTACGTCCCCGTTGTACAGAATTGAGAGAAAACTTGGGAAGGGAGGATTTGGGCAGGTTTATGTTGGTCGGCGGGTAGGAGCTTTGAATTCTAGTGAACGAACTGGTCCTGGTGCTGTTGAGGTAGCCTTAAAATTTGAGCATAGAAGCAGCAAGGGGTGCAATTATGGACCTCCATACGAGTGGCAGGTTTACAATGCATTAGGTGGTAGTCACGGTGTTCCGCGAGTTCATTTCAAGGGGCGGCAAGGTGACTACTATATTATGGTCATGGATATGCTTGGCCCTAGTCTGTGGGATGTTTGGAATAACAATTCTCACACGATGTCTACTGAAATGGTTGCATGTATTGCAATTGAGGCTATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCATGGTGATGTAAAACCTGAGAACTTTTTGCTTGGACCCCCTGGAACTCCTGATGAAAAGAAGTTATTTCTGGTTGATCTTGGATTAGCAACTCGGTGGCGTGATAGTTCGACTGGCCTTCATGTTGACTATGATCAACGTCCAGAtgtttttagGGGCACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTCCTTCTTCGTGGTCGGCTACCTTGGCAGGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCCACTTCTCCAGAAACTTTGTGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGTTGAATATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTTGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGAGGGTGCTCAGAAGCTTATATGTCAAGTTGGACATAAGAGGGGGCGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTTCGAATGGGAATGCCTGCTACACAATGGATTAGTATTTACAATGCTCGTCGACCAATGAAGCAAAGATATCATTATAATGTTGCTGATGTGCGGCTGGCCCAACATATTGATAAAGGAAATGAAGATGGTTTATTTATCAGCAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCTTCCCACTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAGAGGAATTATTACATTAGTGCCATAGCTGGAGCTAATAATGGATGTTCATTGGTTGTAATGTCTAAAGGTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTACGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCCCGTGGGGCTGGTTTTTCGGACCAGGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAGTGGTTATCGCATCACCTCAACTGCTGCAACATGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAGGAGACCCTCCGCACATCTGCTTTTCCTAGTACTCATGTCAAGGAAAAATGGGCAAAGAATCTCTATATTGCATCTATTTGTTACGGGAGAACAGTGTCATAG 2118 0.4594 MPPELRARPRRNRLLENANPYPIPQPDSPAAAGARRRRRTAAAAPTRRNRRQNNAIGADETVSDDDDYAGAGRGTRARKLKDEQGQKKKKLSVRVLKKEAMDEYDSGGRSADKAPGADDEGTTAPLPEKVQLGTSPLYRIERKLGKGGFGQVYVGRRVGALNSSERTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHFKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLICQVGHKRGRLTMEEDDDEQPKKKVRMGMPATQWISIYNARRPMKQRYHYNVADVRLAQHIDKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYELSSHFLHKEWIMEQWERNYYISAIAGANNGCSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDSGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3261 705 CDD STKc_CK1 138 414 - -
Ssu1g3261 705 ProSiteProfiles Protein kinase domain profile. 138 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3261 705 PANTHER CASEIN KINASE-RELATED 85 679 - -
Ssu1g3261 705 MobiDBLite consensus disorder prediction 66 116 - -
Ssu1g3261 705 PANTHER - 85 679 - -
Ssu1g3261 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Ssu1g3261 705 Pfam Protein kinase domain 138 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3261 705 MobiDBLite consensus disorder prediction 1 128 - -
Ssu1g3261 705 ProSitePatterns Protein kinases ATP-binding region signature. 144 177 IPR017441 GO:0005524
Ssu1g3261 705 SUPERFAMILY Protein kinase-like (PK-like) 138 418 IPR011009 -
Ssu1g3261 705 SMART serkin_6 138 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3261 705 Gene3D Transferase(Phosphotransferase) domain 1 108 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3261 Ssu-Chr1 84847017 84851982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3261 233 414 MAP Kinase Kinase Kinase AT5G50180 25.000 1.24e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Ssu1g3261 Pkinase 2.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3261 - - gmx:100779382 1269.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3261 1 84847017 84851982 Ssu1g3261 1 84847017 84851982 ECH
Ssu1g3261 1 84847017 84851982 Ssu4g1780 4 32020576 32026309 PCT