Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3252 ATGTTCAAAATACCCCTCTTCGTGCTGAAATTTCCTTTTCACTTGCTCTTACTGCTCAGTGTCACAGTACCCTTTCAAGTAATTTCACAAACAGCAAGCCCCGAACAAACAATCCTACTCACTCTCAAACGTGAACTGGGGGACCCACCGTCGCTCCAATCATGGGAACCGTCACCGTCGGCGCCGTGCGACTGGCCGGAGATTCGCTGCACCGGCGGCGCCGTCACGAAGCTCCTCCTCTCCGGCAAAGGCATCACCGCCCAGAACCTCTCCGCCACAATCTGCAGCCTCAAAAACCTCATCAAACTCGACCTCTCCGACAACTCCATCGCCGGCGAGTTCCCGGCAACCTTGTACAACTGCTCCAACCTCCGGCACCTAGACCTGTCGGAAAACTACCTCGCCGGAGCAATCCCCGCCGACATCGACCGCCTCAAAACCCTCACTTACCTCAGCCTCGGCGGCAACACCTTCTCCGGCGAGATTCCGGCGGCGATCGGAAACCTGCCGGAGCTGCAGACGCTACACCTTTTCAAAAACAACTTCAACGGAACCATCCCCGGGGAAATCGGTAACCTGTCCAATCTTGAAACCTTGGGTTTGGCTTATAACCTCAAGCTCGCGCGGGCGAAAATCCCGTTGGAGTTTGCGAAGTTAAGGAGATTGAGGTTTATATGGTTAACGCAGTGTAACTTGGTCGGAGAGATTCCAGAATACTTGGGGAATCTCACGAATCTGGAACAGCTGGATTTATCGAGGAACAATTTAACAGGGAGGATTCCTAGGAGTTTGTTCTCGCTGCGGAAGTTGAAGTTCTTGTACCTGTTTCGTAATAGTTTGTCGGGTGAGATACCTAGTACTACGATGCAGGGTTTGAATTTAACGGATGTTGATTTGGCTATGAACAATTTAACGGGTTCCATACCGCGCGAGTTTGGGAACTTGAAGAATTTGAGGACCTTGCACTTGTATATGAATCAGTTGTCTGGTGAGATTCCAAGAAGTTTGAGCCTAATTCCTAGTCTTGAGTACTTCAGGGTTTATAGCAATAACCTGAGCGGAACACTGCCTCCGGAACTAGGCTTGCATTCGAGGCTTGTTGCGTTTGAAGTTTCCGGGAACCAACTCAGTGGTGGGTTGCCGGAACATTTGTGTGAAGGTGGTGCTCTTATTGGTGCTGTTGCTTTTGCCAACAATTTTAGTGGTGTTTTGCCTGAATGGCTTGGGAATTGTCCTTCTCTCGCCACGGTTCAGGTTTCTGATAACAAGTTTTCGGGGGAGGTTCCTTTGGGTTTGTGGACTTCGAGGAACCTCTCGTTCTTGATCTTGAGCAACAACTCCTTGTCTGGTCAGCTTCCGAGGAAAGTATATTGGAACATGACGAGGCTTGAGATCGGGAACAACAAGTTCTCGGGTGGGATATCTGTTGGAATCACTTCTGCCACAAAGCTAAGGGTTTTCGATGCGAGAAACAACATGCTCTCGGGTGAAATTCCAAGGGAATTGACGCGTCTTTCTCGGCTTACCACTCTCGTGCTTGATGGTAATCAACTTTCTGGTGCACTTCCATCTGAGATTATTTCGTGGGAATCACTGAATACTATGACGCTCTCGGGAAACAAACTTTCTGGCCAGATCCCCGCAGCTATGGCTGCTCTTTCTAACCTGGTTTACTTGGACTTGTCTGGGAATGACATATCGGGTGAAATCCCACCTCAGTTTGATAGATTGAGGCTTGTTTTTCTCAACTTGTCCTCCAACCAGCTATCTGGGAACATCCCTTTTGAGTTTAATAACCCCGCATTTGACAACAGTTTCTTGAACAATCCCCATCTATGTGCTTACAATCCGAAACTCAACCTTCGTAACTGCTTCACCAAAACCGCAACACGCTCGACCAATTCGTCTTCCAAGTCACTTGCCCTGATTCTAGCTGTCACCATCGTTGTGTTGCTGGCCACAGCCTCCTTGGTCTTCTACACGTTGAAAAGGCAACGGCGCAAAAAGCACAGTGGGAGTAAGCTTGCAACGTGGAGGATCACCTCATTCCAGAAGCTTGATCTCAGGGAAATGAACCTCTTCTCAAGTTTGACAGACAACAACCTCATAGGAAGTGGAGGGTTCGGGAAAGTTTACCGGATTGCTTCAAATCGTCCGGGGGAGTATGTTGCGGTGAAAAAGATTTGGAATCGCAAAGATGTGGATGACAAGTTGGAGAAAGAGTTCAAGGCTGAGGTTGAGATCCTGGGCAATATTCGGCACACGAATATAGTGAAACTTTTGTGTTGTTATTCGAGTGAGAACTCCAAACTTCTTGTTTATGAATACATGGAAAATCAGAGCCTGGACAAATGGCTTCATGGAAAGAAGAAAACGTCACCTACTGGGCTGAGTTGGCCAACGAGGTTGAATATTGCTATTGGGGCTGCACAAGGTCTGTGTTATATGCACCATGAATGCTCACCCCCTGTCATCCACCGAGATGTCAAATCTAGCAATATACTGTTGGACTCGGAGTTCAGAGCTAAAATAGCAGATTTTGGTCTCGCCAAGATGTTGGCAAAGCCCGGGGAACCACACACCATGTCTACTCTAGCAGGGTCTTTCGGCTACATTCCACCAGAATATGCCTATTCAACTAAGATTAATGAGAAAGTTGATGTGTATAGCTTTGGGGTTGTGCTCCTAGAGCTTGTGACGGGAAGAAAGCCTAATAAAGGAGGGGAGCATGCATGTAGCCTAGTTGATTGGGCGTGGGAGCATTTTAGTGAAGGTAAGAGCCTTAGTGATACATTCGATGAGGATATCAACGAACCACGTTATGCGGAAGAGATGACGAATGTCTTCAAATTGGGCCTCCTTTGCACAAGCTCGTTGCCCTCAACTAGACCTTCCACGAAGGAGATTTTGCAAGTTCTTCGTCGGTGTTGTCATTCAGGTTCTACACGTACAAGAGTGGGAAACGAGTTTGATATCACTCCTCTTCTTGGTGATACAAGGTACATTTGTAGTTACAAGGAGAGTAATGCTGCAAGCAATAACTCCTCTTGGTGA 3054 0.4781 MFKIPLFVLKFPFHLLLLLSVTVPFQVISQTASPEQTILLTLKRELGDPPSLQSWEPSPSAPCDWPEIRCTGGAVTKLLLSGKGITAQNLSATICSLKNLIKLDLSDNSIAGEFPATLYNCSNLRHLDLSENYLAGAIPADIDRLKTLTYLSLGGNTFSGEIPAAIGNLPELQTLHLFKNNFNGTIPGEIGNLSNLETLGLAYNLKLARAKIPLEFAKLRRLRFIWLTQCNLVGEIPEYLGNLTNLEQLDLSRNNLTGRIPRSLFSLRKLKFLYLFRNSLSGEIPSTTMQGLNLTDVDLAMNNLTGSIPREFGNLKNLRTLHLYMNQLSGEIPRSLSLIPSLEYFRVYSNNLSGTLPPELGLHSRLVAFEVSGNQLSGGLPEHLCEGGALIGAVAFANNFSGVLPEWLGNCPSLATVQVSDNKFSGEVPLGLWTSRNLSFLILSNNSLSGQLPRKVYWNMTRLEIGNNKFSGGISVGITSATKLRVFDARNNMLSGEIPRELTRLSRLTTLVLDGNQLSGALPSEIISWESLNTMTLSGNKLSGQIPAAMAALSNLVYLDLSGNDISGEIPPQFDRLRLVFLNLSSNQLSGNIPFEFNNPAFDNSFLNNPHLCAYNPKLNLRNCFTKTATRSTNSSSKSLALILAVTIVVLLATASLVFYTLKRQRRKKHSGSKLATWRITSFQKLDLREMNLFSSLTDNNLIGSGGFGKVYRIASNRPGEYVAVKKIWNRKDVDDKLEKEFKAEVEILGNIRHTNIVKLLCCYSSENSKLLVYEYMENQSLDKWLHGKKKTSPTGLSWPTRLNIAIGAAQGLCYMHHECSPPVIHRDVKSSNILLDSEFRAKIADFGLAKMLAKPGEPHTMSTLAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGRKPNKGGEHACSLVDWAWEHFSEGKSLSDTFDEDINEPRYAEEMTNVFKLGLLCTSSLPSTRPSTKEILQVLRRCCHSGSTRTRVGNEFDITPLLGDTRYICSYKESNAASNNSSW 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3252 1017 SUPERFAMILY L domain-like 398 599 - -
Ssu1g3252 1017 Gene3D Transferase(Phosphotransferase) domain 1 777 990 - -
Ssu1g3252 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Ssu1g3252 1017 Pfam Protein kinase domain 699 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3252 1017 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Ssu1g3252 1017 SUPERFAMILY L domain-like 41 381 - -
Ssu1g3252 1017 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 990 - -
Ssu1g3252 1017 Gene3D Ribonuclease Inhibitor 32 186 IPR032675 -
Ssu1g3252 1017 Gene3D Ribonuclease Inhibitor 187 290 IPR032675 -
Ssu1g3252 1017 SMART LRR_typ_2 122 145 IPR003591 -
Ssu1g3252 1017 SMART LRR_typ_2 553 576 IPR003591 -
Ssu1g3252 1017 SMART LRR_typ_2 315 338 IPR003591 -
Ssu1g3252 1017 SMART LRR_typ_2 97 121 IPR003591 -
Ssu1g3252 1017 SMART LRR_typ_2 243 267 IPR003591 -
Ssu1g3252 1017 SMART LRR_typ_2 339 363 IPR003591 -
Ssu1g3252 1017 SMART LRR_typ_2 505 529 IPR003591 -
Ssu1g3252 1017 SMART LRR_typ_2 169 193 IPR003591 -
Ssu1g3252 1017 Pfam Leucine rich repeat 99 156 IPR001611 GO:0005515
Ssu1g3252 1017 Pfam Leucine rich repeat 225 280 IPR001611 GO:0005515
Ssu1g3252 1017 Pfam Leucine rich repeat 531 589 IPR001611 GO:0005515
Ssu1g3252 1017 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 16 990 - -
Ssu1g3252 1017 Gene3D Ribonuclease Inhibitor 396 643 IPR032675 -
Ssu1g3252 1017 Gene3D Ribonuclease Inhibitor 291 388 IPR032675 -
Ssu1g3252 1017 Gene3D Phosphorylase Kinase; domain 1 678 776 - -
Ssu1g3252 1017 SUPERFAMILY Protein kinase-like (PK-like) 691 973 IPR011009 -
Ssu1g3252 1017 PRINTS Leucine-rich repeat signature 243 256 - -
Ssu1g3252 1017 PRINTS Leucine-rich repeat signature 124 137 - -
Ssu1g3252 1017 ProSitePatterns Protein kinases ATP-binding region signature. 703 727 IPR017441 GO:0005524
Ssu1g3252 1017 ProSiteProfiles Protein kinase domain profile. 697 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3252 1017 SMART serkin_6 697 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3252 Ssu-Chr1 84686710 84689854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3252 22 984 Receptor kinase-like Gene Family AT5G25930 53.767 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu1g3252 Pkinase 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3252 K00924 - gmx:100782466 1600.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3252 1 84686710 84689854 Ssu1g3252 1 84686710 84689854 ECH