Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3249 ATGGCCATCGCAACAGAGACTCAACCTCAACAACACAAGGCTGCTTCTTCGGAGGTTTCGGGTTCAGCTGTGGAGCAAAGAAGGTGGACGCTTAACGATTTCGAAATTGGAAAACCTCTTGGAAGGGGAAAATTCGGCCACGTCTATTTGGCCAGAGAAACGACTAGTAATCACATTGTTGCTTTGAAAGTACTCTTTAAGAGCCAATTGCAACACTCCCAAGTTGTGCATCAACTTCAACGTGAAGTTGAAATACAAAGTCACCTCCGACATCCCCACATCTTGCGCCTTTATGGATACTTTTATGATCAGAAACGagtttttttgattttagaGTATGCACCCAAAGGTGAACTTTACAAGGAGTTGCAGAAATGCAAATATTTCAGTGAAAGGCGTGCAGCTACTTATGTTGCATCATTGACCAGAGCCCTTATATATTGCCATGGAAAGCACGTAATACATAGGGACATTAAACCAGAGAACCTTCTTATTGGTGCACAGGGTGAACTGAAAATAGCAGACTTTGGATGGTCAGTGTGCACATTCAATAGCAGGCGGACCATGTGTGGCACACTGGATTATCTTCCTCCTGAGATGGTGGAAAGGGTAGAACATGATGCGAATGTGGATATATGGAGCCTTGGTGTCCTGTGCTATGAGTTTCTTTATGGAGTCCCTCCTTTTGAGGCTAAAGAATATTCTGATACTTACAGGAGGATAGTACAAGTGGATCTCAAGTTCCCTCCTAAACCAATTGTGTCTTCCGCTGCAAAGGATCTCATTAGTCAGatgCTGGTCAAGGATTCCTCTCAACGTCTTCCATTGCACAAACTCCTTGATCACCCTTGGATTGTTCAGAATGCGGAGCCCTCCGGTGTATGTTGGGGCTGGTGA 897 0.4392 MAIATETQPQQHKAASSEVSGSAVEQRRWTLNDFEIGKPLGRGKFGHVYLARETTSNHIVALKVLFKSQLQHSQVVHQLQREVEIQSHLRHPHILRLYGYFYDQKRVFLILEYAPKGELYKELQKCKYFSERRAATYVASLTRALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVCTFNSRRTMCGTLDYLPPEMVERVEHDANVDIWSLGVLCYEFLYGVPPFEAKEYSDTYRRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSSQRLPLHKLLDHPWIVQNAEPSGVCWGW 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3249 298 Gene3D Phosphorylase Kinase; domain 1 21 117 - -
Ssu1g3249 298 PIRSF ILK 4 282 - -
Ssu1g3249 298 SMART serkin_6 34 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3249 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Ssu1g3249 298 Gene3D Transferase(Phosphotransferase) domain 1 118 293 - -
Ssu1g3249 298 MobiDBLite consensus disorder prediction 1 21 - -
Ssu1g3249 298 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 1 295 - -
Ssu1g3249 298 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Ssu1g3249 298 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 295 IPR030616 GO:0004672
Ssu1g3249 298 Pfam Protein kinase domain 34 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3249 298 CDD STKc_Aurora 33 286 - -
Ssu1g3249 298 SUPERFAMILY Protein kinase-like (PK-like) 23 289 IPR011009 -
Ssu1g3249 298 ProSiteProfiles Protein kinase domain profile. 34 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3249 Ssu-Chr1 84623670 84630231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3249 25 291 CBL-interacting serine-threonine protein kinases AT5G10930 36.496 3.48e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Ssu1g3249 Pkinase 2.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3249 K08850 - gmx:100775451 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3249 1 84623670 84630231 Ssu1g3249 1 84623670 84630231 ECH