Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3248 ATGGCCATCGCAACAGAGACTCAACCTCAACCCCAACAACACAAGGCTTCTTCGGAGAATTCGAGTTCAGCTGCGGAGCAAAGAAGGTGGACGCTTAACGATTTCGATATTGGAAAGCCTCTTGGAAGGGGAAAATTCGGCCACGTCTATTTGGCCAGAGAAAAGAGTAGTAATCATATTGTTGCTTTGAAAGTACTATTTAAGAGCCAATTGCAACAATCCCAAGTTGTGCATCAACTTCGACGAGAAGTTGAAATACAAAGTCATCTCCGACATCCGCACATCTTGCGCCTCTATGGATACTTTTATGATCAGAAACgagtttatttgattttagagTATGCACCCAAAGGTGAACTTTACAAGGAATTGCAAAAATGCAAATATTTCAGTGAAAGGCGTGCAGCTACTTATGTTGCATCATTGGCTCGAGCCCTTATATATTGCCATGGAAAGCATGTAATTCATAGGGACATTAAACCGGAGAACCTTCTTATTGGTGCACAGGGTGAGCTGAAAATAGCAGACTTTGGGTGGTCAGTGCACACATTCAATCGCAGGCGGACCATGTGTGGCACACTGGATTACCTTCCTCCTGAGATGGTGGAGAGTGTAGAGCATGATGCTAGTGTGGATATATGGAGCCTTGGTGTCCTGTGCTATGAGTTTCTTTATGGAGTCCCACCTTTTGAGGCTAAAGAACATTCTGATACTTACAGGAGGATAATACAAGTGGATCTCAAGTTTCCTCCTAAACCAATTGTGTCTTCCGCTGCAAAGGATCTCATTAGTCAGATGCTGGTAAAGGATTCCTCTCAACGTCTACCATTGCACAAACTCCTTGAACACCCTTGGATTGTTCAGAATGCGGAGCCCTCCGGTGTATATAGGGGCTAG 897 0.4359 MAIATETQPQPQQHKASSENSSSAAEQRRWTLNDFDIGKPLGRGKFGHVYLAREKSSNHIVALKVLFKSQLQQSQVVHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIIQVDLKFPPKPIVSSAAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNAEPSGVYRG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3248 298 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 298 IPR030616 GO:0004672
Ssu1g3248 298 ProSiteProfiles Protein kinase domain profile. 35 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3248 298 SMART serkin_6 35 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3248 298 Gene3D Transferase(Phosphotransferase) domain 1 119 294 - -
Ssu1g3248 298 MobiDBLite consensus disorder prediction 1 25 - -
Ssu1g3248 298 PIRSF ILK 3 283 - -
Ssu1g3248 298 Gene3D Phosphorylase Kinase; domain 1 22 118 - -
Ssu1g3248 298 CDD STKc_Aurora 34 287 - -
Ssu1g3248 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Ssu1g3248 298 SUPERFAMILY Protein kinase-like (PK-like) 20 290 IPR011009 -
Ssu1g3248 298 Pfam Protein kinase domain 37 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3248 298 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 1 298 - -
Ssu1g3248 298 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3248 Ssu-Chr1 84619476 84622299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3248 26 297 CBL-interacting serine-threonine protein kinases AT5G10930 35.125 1.35e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Ssu1g3248 Pkinase 2.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3248 K08850 - gmx:100803678 579.326