Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3231 ATGAACCATCCCTTCATCACCCTCTTTACTATTGGACTCATCGTTTCCATGACCAGCGTCTCACTCTCAGCACAGGCTATCAGCAGTGGCAGCACCAAGAACCAATCGCAGTTTTTCTCTCTGATGAAGGAGTCTCTCTCGGGGAGGTACCCGATGAATTGGGACGCGGGGAAACCCGTGTGCGACTTCACCGGAGTTACCTGCAACGCCAAAGGTGACGTTATCAACCTCCACCTTTCAGGTTGGACATCACTTTCTGGAAAGTTCCCCTCAGATATATGCTCTTACCTCCCAGAGTTACGTGCTCTCGGCCTCGGCCACACCAGGTTCAAGTTCCCCATAAACACCATACTCAACTGTTCCCACTTGGAAGAGCTTAACATGAACCACATGGACCTAACCGGCACGCTCCCAGATTTCTCTTCCTTGAAATCTCTTAGGATTCTCGACTTGTCCTACAATCTCTTCACTGGCCAGTTCCCCATGTCAGTGTTCAACCTCACCAACCTCGAGGTGCTAAACTTCAACGAGAACGGAGGTTTCAGCCTGTGGCAGTTGCCAGCGGATATTGACAGGCTGAGAAATCTCAAGTCCGTGGTGCTCACAACGTGCATGGTGCATGGCCAAATCCCCGCGTCCATAGGGAACATAACTTCCCTCACCGATCTTGAACTGAGTGGGAATTTTCTCACTGGACAAATTCCCAAAGAGCTTGGTCAGCTGAAGAACCTGCAACAGCTTGAGCTTTACTACAACTACCATCTCGTTGGGAACATACCAGAGGAGTTGGGGAACCTCACGGAGCTCGTGGATTTGGACATGTCAGTGAACAAGTTCACGGGGAGTATCCCTGCTTCGGTGTGTGGGCTTCCCAAGCTTCAATCCTTGCAGCTCTACAACAACAGCCTCACAGGAGAAATCCCAGGTGCGATTGAAAACTCAACAACCTTGAGAATATTGTCTCTCTACGACAACTTCCTTGTAGGACAAGTTCCCAGGAAACTGGGACAGTTCTCCGGGATGTTGGTTCTTGACTTGTCGGAGAACAAATTATCTGGCCCGTTGCCAACGGAGGTTTGCAAGGGAGGTACGCTAGAGTACTTTCTCGTTCTGGATAACATGTTTTCTGGTGAGATACCAGAGAGTTACTCAAACTGCATGATGCTGTTGAGGTTTAGAGTGAGCAACAACCGTTTGGAGGGCTCTATTCCCGAGGGGCTTCTTGGTCTGCCACACGTTTCAATCATTGATTTGAGTAACAATAATTTGACCGGTCCAATTCCTGAGATTAACGGAAATTCTAGAAACTTGTCTGAACTGTTTCTTCAGAGGAACAGGATTTCAGGTGTCATAACTCCCACGATCTCCCGAGCCATTAATTTGGTCAAGATTGATTTCAGCTATAACCTTTTGTCTGGTCCAATCCCTTCCGAAATTGGCAACCTGAGAAGGCTTAATTTGCTTATGCTGCAAGGGAACAAGCTGAGTTCCTCCATCCCCGGTTCACTCTCTTCATTGGAGTCTCTCAACCTTCTTGACCTCTCCAATAATCTTTTGACCGGGAGCATCCCTGAAAGCCTCTCTGTGCTGCTCCCCAATTCCATTAACTTCTCACACAACCTTCTTTCGGGTCCAATTCCTCCCAAACTGATCAAAGGGGGTTTGGTGGAAAGTTTCGCGGGGAATCCTGGTTTGTGCGTGTTACCGGTGTATGCTAACTCATCGGATCAAAACTTCCCCATATGTGCAAGTGCGTACAAGAGCAAGAGGATAAACACCATCTGGATAGCTGGGGTGTCGGTGGTTCTGATCTTTATTGGGTCTGCCTTGTTTCTCAAACGTAGGTGCAGCAAAGACAGGGCCGCAGTGGAATACGAGGAGTCACTGCCTTCTTCGTTCTTCTCTTTCGACGTTAAGAGCTTCCACAAGATCTCTTTCGACCAAAGGGAGATCATCGAGTCCTTGGTGGACAAGAACATAATGGGGCATGGAGGGTCTGGGACAGTGTACAAGATTGGGTTGAAGAGCGGTGATATTGTTGCTGTAAAGAAGCTGTGGAGTCACAAGTCCAAGGATTCGGCTCCAGAGGATCGGTTAGTTGTGGACAAGGCACTGAAAGCAGAGGTGGAGACCCTGGGAAGCATAAGACACAAGAACATAGTGAAACTCTACTGCTGCTTCTCCAGTTTGGACTGCAGCTTGTTGGTTTATGAGTACATGCCTAATGGTACCCTTTGGGATTCTCTGCACAAGGGTTTGGTCCTTTTGGATTGGCCTACTCGTTATAGAATTGCACTGGGGATTGCACAGGGTTTGGCATACCTACACCATGATCTGCTTCTTCCTATTATCCATCGAGACATCAAGTCAACTAATATCCTGCTGGATGTTGATTACCAGCCTAAGGTTGCAGACTTTGGGATTGCCAAGGTTTTGCAAGCAAGAGGAGGGAAGGATTCCACTACAACTGTTATTGCAGGAACATATGGCTACTTAGCCCCAGAATTTGCATATTCATCAAGGGCCACCACCAAGTGCGATGTCTACAGTTTTGGAGTGATTTTAATGGAACTGTTAACTGGGAAGAAGCCCGTGGAGGCAGAATTTGGAGAGAACAGAAATATTGTTTTCTGGGTTTCGAACAAAGTAGAAGGCAAGGAAGGGGCTAGACCAAGTGAGGTATTTGACCCGAGATTATCATGTTCATTCAAGGATGACATGATCAAAGTGTTACGGATTGCTATTCGCTGCACCTACAAAGCCCCAACAAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTGAGGCAGAGCCACGCGGTTCCGATTCTTGCAAGTTGTCAACCAAAGATGTATCAAATGTCAACGTATTAAAGAAAccatatgaattataa 2898 0.4727 MNHPFITLFTIGLIVSMTSVSLSAQAISSGSTKNQSQFFSLMKESLSGRYPMNWDAGKPVCDFTGVTCNAKGDVINLHLSGWTSLSGKFPSDICSYLPELRALGLGHTRFKFPINTILNCSHLEELNMNHMDLTGTLPDFSSLKSLRILDLSYNLFTGQFPMSVFNLTNLEVLNFNENGGFSLWQLPADIDRLRNLKSVVLTTCMVHGQIPASIGNITSLTDLELSGNFLTGQIPKELGQLKNLQQLELYYNYHLVGNIPEELGNLTELVDLDMSVNKFTGSIPASVCGLPKLQSLQLYNNSLTGEIPGAIENSTTLRILSLYDNFLVGQVPRKLGQFSGMLVLDLSENKLSGPLPTEVCKGGTLEYFLVLDNMFSGEIPESYSNCMMLLRFRVSNNRLEGSIPEGLLGLPHVSIIDLSNNNLTGPIPEINGNSRNLSELFLQRNRISGVITPTISRAINLVKIDFSYNLLSGPIPSEIGNLRRLNLLMLQGNKLSSSIPGSLSSLESLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNLLSGPIPPKLIKGGLVESFAGNPGLCVLPVYANSSDQNFPICASAYKSKRINTIWIAGVSVVLIFIGSALFLKRRCSKDRAAVEYEESLPSSFFSFDVKSFHKISFDQREIIESLVDKNIMGHGGSGTVYKIGLKSGDIVAVKKLWSHKSKDSAPEDRLVVDKALKAEVETLGSIRHKNIVKLYCCFSSLDCSLLVYEYMPNGTLWDSLHKGLVLLDWPTRYRIALGIAQGLAYLHHDLLLPIIHRDIKSTNILLDVDYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEFAYSSRATTKCDVYSFGVILMELLTGKKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVFDPRLSCSFKDDMIKVLRIAIRCTYKAPTSRPTMKEVVQLLIEAEPRGSDSCKLSTKDVSNVNVLKKPYEL 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3231 965 SMART LRR_typ_2 143 167 IPR003591 -
Ssu1g3231 965 SMART LRR_typ_2 506 530 IPR003591 -
Ssu1g3231 965 SMART LRR_typ_2 482 505 IPR003591 -
Ssu1g3231 965 SMART LRR_typ_2 410 433 IPR003591 -
Ssu1g3231 965 SMART LRR_typ_2 290 314 IPR003591 -
Ssu1g3231 965 SMART LRR_typ_2 217 241 IPR003591 -
Ssu1g3231 965 SMART LRR_typ_2 338 362 IPR003591 -
Ssu1g3231 965 Gene3D Phosphorylase Kinase; domain 1 638 739 - -
Ssu1g3231 965 Gene3D Ribonuclease Inhibitor 183 287 IPR032675 -
Ssu1g3231 965 SUPERFAMILY Protein kinase-like (PK-like) 641 935 IPR011009 -
Ssu1g3231 965 SUPERFAMILY RNI-like 253 578 - -
Ssu1g3231 965 Gene3D Ribonuclease Inhibitor 288 577 IPR032675 -
Ssu1g3231 965 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 13 946 - -
Ssu1g3231 965 Gene3D Ribonuclease Inhibitor 33 182 IPR032675 -
Ssu1g3231 965 SUPERFAMILY L domain-like 75 356 - -
Ssu1g3231 965 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 946 - -
Ssu1g3231 965 Pfam Protein kinase domain 657 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3231 965 Gene3D Transferase(Phosphotransferase) domain 1 740 957 - -
Ssu1g3231 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Ssu1g3231 965 SMART serkin_6 655 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3231 965 ProSiteProfiles Protein kinase domain profile. 655 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3231 Ssu-Chr1 84249631 84252893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3231 23 942 Receptor kinase-like Gene Family AT5G49660 65.372 0.0 1211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu1g3231 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3231 - - gmx:100785822 1700.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3231 1 84249631 84252893 Ssu1g3231 1 84249631 84252893 ECH