Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3230 ATGTTCGCCGCCTTGCGAGTCCTTCTTCTCCTCTCACTCTTCTCACTACTCGCCAGCGCCCAGTCCAACGACGAGCGTCAAATCCTTCTGAACCTAAAATCCTCCCTGgagaaatcaaattcaaaactcTTTGACTCATGGAATGCCACCAATTCCGTATGCAGTTTCCACGGAGTCACTTGCAACTCCTTCCGTTCCGTCACCGAAATCAACCTTTCCAACCAAACGCTCTCCGGGGTCCTCCCCTTTGACTCGCTCTGCAACCTTCCATCGCTCCAAAAACTCGCGCTCGGTTTCAACAACTTGCACGGCAATGTTTCAGAGGACCTTAAAAACTGCGTCAGATTGCGGTACTTGGACTTGGGAAACAACCTTTTCTCTGGTCCCTTCCCCGACATATCTCCTCTCAACCAATTGCAGTATCTTTTCCTAAACATGAGTGGATTTTCGGGAACTTTTCCGTGGCAGTCGCTGTTAAACATGACGGGTCTGTTACAGTTGAGTGTCGGAGATAACCCTTTCGACCTCACGCCGTTTCCCAAAGAGGTTGTGAGCCTCAAGAACCTGAATTGGCTCTACCTATCGAACTGCACCCTCGGAGGGAGACTTCCGGTCGGGATCGGCAACCTCACGGAGCTCACCGAATTGGAATTCTCCGACAATTTCATCACCGGCGATTTTCCCGCGGAGATTGTGAACCTTCGGAAGCTCTGGCAGCTTATCTTCTTCGACAACTCCTTCACGGGGAAGATTCCAACCGGCTTGAGAAACCTCACGGGACTCAACTATTTAGACGGGTCCACGAATAACCTCGAAGGGGATCTCTCTGAATTGAAGTACTTGACCAATCTAGTTTCGCTGCAATTTTTCGAGAACAACTTGTCGGGGGAGATTCCGATTGAGATAGGCGAGTTCAAACGCCTCAAGGCTCTGTCTCTGTACAGGAACAAATTGACGGGTCCTATTCCTCGCGAGGTTGGGTCCTGGGCCGAGTTTGATTTCATCGACGTGTCGGAGAATTTCTTGATCGGTACGATTCCGCCGGACATGTGTAAAAAGGGAAAGATGACGGCGCTGCTCGTGCTTCAGAACAACCTCTCCGGCGAGATTCCGGCCACGTACGGTGACTGTTTGAGTCTAAAACGATTCAGAGTCAGCAATAACTCGCTCGCCGGCGCCGTGCCTCCCTCGATTTGGGGACTGCCCAACGCGGAAATAATCGATGTTGAGCTGAATCAGTTGGAAGGTTCGGTCAGTTCCGATGTCAAGAACGCGAAAGCACTTGCCTCGATATTAGCCAGGAAGAACCGGTTGTCCGGTGCATTACCAGAAGAAATCTCAAAAGCGACGTCGTTGGTGAGCGTGGACCTGAGCGAGAATCAGATTACGGGGAACATTCCAGAAGGGATTGGCGAGCTTAAACAGTTAAGTAGCCTTCATTTGCAGAGCAATAAGTTAACAGGGTCGATACCGGAATCTCTCGGTTCCTGTAAATCCCTCAACGACATTGATCTATCGAGGAATTCACTCTCCGGAGAAATCCCTTCCTCGCTGGGTTCTTTCCCCGCTCTGAATTTTCTGAACCTTTCAGAGAACGAGCTCTCGGGTGAAATCCCGGGGAGTTTAGCGTTCCTCAGGCTGAGCCTCTTTGACTTATCGCACAACCGGTTGACCGGTCCAATTCCGCAGGCTCTAACCCTCGAAGCTTACAACGGAAGCCTCTCCGGAAACCCCGGTTTGTGCAGCGTCGACGCGATTAACTCCTTCCCGCGTTGCTCTGCCTCCTCTGGCATGTCCAAGGACATGCGCGCCCTCATAATTTGCTTCGCGATAGCTTCGATATTGTTGCTCTCGTGTTTGGGCGTGTACTTGCAGCGGAAGAAGAGGAGGGAGGAGGAGAGGGAGAAATACGGAGAACGTTCGTTGAAGGAAGAATCCTGGGACGTGAAATCGTTCCACGTGTTAAGTTTCTCGGAGGGGGAGATTCTAGATTCCATCAAGCAGGAGAATGTGATAGGAAAAGGAGGTTCGGGGAACGTGTACAGAGTCGCGCTTTCCAATGGAAAAGAACTCGCGGTGAAGCACATTTGGAGCACCGATTTCCCCGCGCGGAGAAAGTCGTGGAGTAGCACTCCCATGCTTGGGAACAAGCGGGGTGGGAAGTTAAAGGAGTTTGACGCGGAGGTGCAGGCGTTGAGCTCGATAAGGCACGTGAATGTGGTGAAGCTTTATTGCAGCATAACGAGCGAGGATTCGAGCTTGTTGGTGTACGAGTATTTGCCGAATGGGAGCTTGTGGGATCGGCTTCACACGAGTGGGAAGATGGAGCTTGACTGGGAAACGAGGTACGAAATCGCGGTTGGTGCCGCGAAAGGGTTGGAGTATTTGCATCACGGGTGCGAGAGGCCCGTGATTCACAGGGATGTCAAGTCCAGTAACATCTTGTTGGATGAGTTTTTGAAACCTAGGATTGCGGATTTTGGGCTCGCTAAGGTTGTTCAGGCCAACGTTGGCAATGATTCTTCCACTCGTGTCATTGCCGGAACACACGGCTACATTGCTCCTGAATATGGCTACACATACAAGGTGAATGAGAAGAGTGATGTGTACAGCTTTGGGGTGGTGTTAATGGAGCTGGTAACTGGTAAAAGGCCGATTGAACCAGAATTTGGGGAAAATAAGGATATAGTGAGCTGGGTGCATAACAAGGCACGGAGCAAAGAGGGGCTTAGGAGTGCGGTGGACTCGAGAATTCCGGAGATGTATATAGTGGAAGCTTGCAAGGTGTTGAGAACAGCAGTTTTGTGCTCGGCAACGCTTCCGGCTTTAAGACCCACCATGAGAGCTGTGGTTCAAAAACTTGAGGATGCTGAGCCTTGTAAATTGGTTGGAATTGTTATTAGCAAAGACGGCAAACAATGTATTCCATAG 2931 0.5043 MFAALRVLLLLSLFSLLASAQSNDERQILLNLKSSLEKSNSKLFDSWNATNSVCSFHGVTCNSFRSVTEINLSNQTLSGVLPFDSLCNLPSLQKLALGFNNLHGNVSEDLKNCVRLRYLDLGNNLFSGPFPDISPLNQLQYLFLNMSGFSGTFPWQSLLNMTGLLQLSVGDNPFDLTPFPKEVVSLKNLNWLYLSNCTLGGRLPVGIGNLTELTELEFSDNFITGDFPAEIVNLRKLWQLIFFDNSFTGKIPTGLRNLTGLNYLDGSTNNLEGDLSELKYLTNLVSLQFFENNLSGEIPIEIGEFKRLKALSLYRNKLTGPIPREVGSWAEFDFIDVSENFLIGTIPPDMCKKGKMTALLVLQNNLSGEIPATYGDCLSLKRFRVSNNSLAGAVPPSIWGLPNAEIIDVELNQLEGSVSSDVKNAKALASILARKNRLSGALPEEISKATSLVSVDLSENQITGNIPEGIGELKQLSSLHLQSNKLTGSIPESLGSCKSLNDIDLSRNSLSGEIPSSLGSFPALNFLNLSENELSGEIPGSLAFLRLSLFDLSHNRLTGPIPQALTLEAYNGSLSGNPGLCSVDAINSFPRCSASSGMSKDMRALIICFAIASILLLSCLGVYLQRKKRREEEREKYGERSLKEESWDVKSFHVLSFSEGEILDSIKQENVIGKGGSGNVYRVALSNGKELAVKHIWSTDFPARRKSWSSTPMLGNKRGGKLKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTSGKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKVVQANVGNDSSTRVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPIEPEFGENKDIVSWVHNKARSKEGLRSAVDSRIPEMYIVEACKVLRTAVLCSATLPALRPTMRAVVQKLEDAEPCKLVGIVISKDGKQCIP 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3230 976 SUPERFAMILY L domain-like 275 590 - -
Ssu1g3230 976 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Ssu1g3230 976 Gene3D Ribonuclease Inhibitor 358 591 IPR032675 -
Ssu1g3230 976 Gene3D Transferase(Phosphotransferase) domain 1 760 963 - -
Ssu1g3230 976 Gene3D Phosphorylase Kinase; domain 1 649 759 - -
Ssu1g3230 976 PANTHER UNNAMED PRODUCT 5 972 - -
Ssu1g3230 976 Pfam Leucine rich repeat 475 534 IPR001611 GO:0005515
Ssu1g3230 976 SMART serkin_6 666 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3230 976 Gene3D Ribonuclease Inhibitor 180 357 IPR032675 -
Ssu1g3230 976 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Ssu1g3230 976 ProSiteProfiles Protein kinase domain profile. 666 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3230 976 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 5 972 - -
Ssu1g3230 976 Pfam Protein kinase domain 668 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3230 976 Gene3D Ribonuclease Inhibitor 21 179 IPR032675 -
Ssu1g3230 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Ssu1g3230 976 SUPERFAMILY Protein kinase-like (PK-like) 657 954 IPR011009 -
Ssu1g3230 976 SUPERFAMILY L domain-like 61 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3230 Ssu-Chr1 84198835 84201884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3230 1 970 Receptor kinase-like Gene Family AT1G09970 61.191 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu1g3230 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3230 - - gmx:100779554 1702.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3230 1 84198835 84201884 Ssu1g3230 1 84198835 84201884 ECH