Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3228 atgttTGCAAGCACACCCGAACAAGATGTTCAGCAATCGTTCGAGGCGTTCTACGAGGGGTGGCTTGCGCGTCAAGAGAACTTGCTAGAACAGCTTCTGAGCGTGATGCCCGATGCGGCCGAGCAACAGAGGACGCTAATCGAGCAAGCTCTGTGTCACTACCAGCAATTTCTGGAAGAGAAATCCAAGGTGGCAAACGACGACGTGTTTCTTCTCTTTCCCCGGCCCTGGCTTTCCGCGTACGAAAGAGCTCTGCTCTGGATCGGGGACTACAAGCCCTCCCTGCCTTTATTTATTCCGTCACGTTGA 309 0.5307 MFASTPEQDVQQSFEAFYEGWLARQENLLEQLLSVMPDAAEQQRTLIEQALCHYQQFLEEKSKVANDDVFLLFPRPWLSAYERALLWIGDYKPSLPLFIPSR 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3228 102 Pfam Seed dormancy control 29 95 IPR025422 GO:0006351|GO:0043565
Ssu1g3228 102 ProSiteProfiles DOG1 domain profile. 11 102 IPR025422 GO:0006351|GO:0043565
Ssu1g3228 102 PANTHER TRANSCRIPTION FACTOR HBP-1B 6 95 - -
Ssu1g3228 102 PANTHER - 6 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3228 Ssu-Chr1 84140066 84140374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3228 13 100 Calmodulin-binding Proteins AT5G10030 34.375 6.03e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3228 - - vra:106760373 141.354