Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3227 ATGACGAATCCCGAAACTCGACATCAACGCCCCCGCCAACACCGCCGGTCCAAAGCTCGACCGTCCTCATCGGCGGCTCGAGCGGCGGTCCGGGATAGGGTTCCGTTGAGGCTGTTGCTGCGGGTGGCGTCGGTTGCCGGTGGCATTCAGTTTGGGTGGGCCTTGCAGCTCTCTCTTCTCACTCCGTACGTGCAGCAGCTCGGGATCCCGCACGTGTGGGCCAGCATCATATGGCTCTGTGGGCCGCTCTCTGGGCTCCTGGTCCAGCCCCTGGTGGGCCACATGAGCGACCGCTGCACCAGCCGCTTCGGGCGCCGAAGACCGTTTATCGTGGGCGGAGCATTGTCGATCATCGTCTCCGTTCTGATCATCGGTCACTCCGCCGACATCGGGTGGTGGTTCGGCGACACCGCCAAACATCGCCCCTGGGCTGTGGGCGTTTTCGTTTTCGGGTTTTGGATTTTGGACGTGGCTAACAACGTCACTCAGGGCCCTTGTAGAGCTTTGCTTGGTGATCTCACTGGCAAGGATCATCGAAGGACACGTGTTGCAAATGCTTATTTCTCCCTGTTTATGGCTATTGGTAATATTCTTGGATATGCAACTGGATCATACAGTGGTTGGTACAAGGTCTTTGCTTTCACAGTTACCCCTGCTTGCAATATTAGTTGTGCAAATCTCAAGTCCGCTTTCTTTCTCGACATTGGTTTCATTGCTCTCACCACCTATATCAGCATCGTGGCAGCTCATGAAGTGCCTCTAAGTTCAAGTGGGACACCCCATGTTGAAGAAGCAGCAGGGGAATCAGGTACTGCAGGAGAAGCTTTCATGTGGGAGCTATTTGGGACATTCAGATATTTTTCAACCCCTATATGGACAATACTGTCTGTTACTGCTTTAACATGGATTGGGTGGTTTCCATTTCTCCTATTTGATACTGATTGGATGGGCCGAGAGATTTATGGTGGTGAGCCAAATGAAGGCCCTAATTATGATACTGGAGTTAGAATGGGGGCACTTGGCTTATTGCTTAATTCAGTTGTTCTTGGAATAACGTCATTACTCATGGAGAGGCTATGCAGGAAACGGGGGGCCGGGTTTGTGTGGGGAATCTCAAATATCCTAATGGCTGTCTGCTTTGTTGCAATGCTTGTTGTAACCTATGTGGCAAATAACATTGGCTATGTGGGCAAAGATCTACCACCAACTGGCATTGTGATAGCTGCATTGATAATCTTTACCGTTCTTGGGTTTCCACTTGCAATCACTTACAGCGTTCCATATGCCTTGATTTCCACGCATATTCAGTCACTGGGGCTTGGCCAAGGATTGTCAATGGGAGTTCTAAATCTTGCAATAGTGATCCCACAGATGGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTATTTGGGGGAGGAAACTCTCCAGCCTTTGCTGTGGCAGCTGTTGCAGCCCTTGTCAGTGGATTCATAGCTGTCCTGGCTATTCCCCGATCGGGTGGTCAAAAGCCTAGAAGCCAAGTATGA 1530 0.5124 MTNPETRHQRPRQHRRSKARPSSSAARAAVRDRVPLRLLLRVASVAGGIQFGWALQLSLLTPYVQQLGIPHVWASIIWLCGPLSGLLVQPLVGHMSDRCTSRFGRRRPFIVGGALSIIVSVLIIGHSADIGWWFGDTAKHRPWAVGVFVFGFWILDVANNVTQGPCRALLGDLTGKDHRRTRVANAYFSLFMAIGNILGYATGSYSGWYKVFAFTVTPACNISCANLKSAFFLDIGFIALTTYISIVAAHEVPLSSSGTPHVEEAAGESGTAGEAFMWELFGTFRYFSTPIWTILSVTALTWIGWFPFLLFDTDWMGREIYGGEPNEGPNYDTGVRMGALGLLLNSVVLGITSLLMERLCRKRGAGFVWGISNILMAVCFVAMLVVTYVANNIGYVGKDLPPTGIVIAALIIFTVLGFPLAITYSVPYALISTHIQSLGLGQGLSMGVLNLAIVIPQMVVSLGSGPWDQLFGGGNSPAFAVAAVAALVSGFIAVLAIPRSGGQKPRSQV 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3227 509 Pfam MFS/sugar transport protein 54 435 - -
Ssu1g3227 509 TIGRFAM GPH_sucrose: sucrose/H+ symporter 34 500 IPR005989 GO:0005887|GO:0008515|GO:0015770
Ssu1g3227 509 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 13 507 - -
Ssu1g3227 509 PANTHER SUGAR TRANSPORTER 13 507 - -
Ssu1g3227 509 SUPERFAMILY MFS general substrate transporter 39 502 IPR036259 -
Ssu1g3227 509 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g3227 509 CDD MFS_SLC45_SUC 39 476 - -
Ssu1g3227 509 Gene3D MFS general substrate transporter like domains 34 496 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3227 Ssu-Chr1 84117496 84137197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3227 2 505 Sucrose Transporter Gene Family AT1G09960 69.094 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3227 K15378 - gmx:100787939 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3227 1 84117496 84137197 Ssu1g3227 1 84117496 84137197 ECH