Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu1g3215 | ATGGGTACTGGTTGGAGAAGAGCCTTCTGCACCCGCGACCCCGAATCTACCATATCGGATAAACAGCCCGGAAGCCCAAGCCCGAGCCCAAGAAGCTGCACCCGATTGGGCTTTCTGTCCGGAGGGAGCAACCCCTCCACTCCACGCTTGCGCTGCACAACAATCGCTGAACCTGCTTCTCAAACAGTAAATGAGAGCCCCAGAGTTCAAAGCACGACCACCCCGAGAGCAACCAAGTCACCCAAAACCCTCGCACCAACTTCTCCGCGCTCCCCTCTCAAGCTCTCCCTCTTCAAGAACAGCTTCAAATTCAGgAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCGATTTACACTGCGGAATGCGGTCACGCGTTTCATTTCCCGTGTATCGCAGCGCATGTACGCAAGCATGGTAGCCTGGTGTGCCCCGTCTGCAACGCCACGTGGAAAGACGTGCCTCTGCTCGCGGCGCACAAGAACCTCGCTGCAGAATCCGCCACGCAAAACGACGTCGCGCAGAGGACCGCCGACAACCCCAATGCCAGCGACAAAAATCCAACAGAAAACGCCTCCCCCGTTTTCAAAACCAACAACCACGTGGAGCCACCGAAGCATTCCGATTCGCTCAGGTCCTCCTACGACGACGACGAACCCCTCCTCTCTCCCACCTCCGGCGGCCGGATTATTCCCATTCCCGAAGCCGACGAGAATGCGGAAGAAGACGACGACGAGGACGCCGGCGAGTTCCAAGGGTTCTTCGTCAATCCGAAGAACTCATCCTCGTCAAAATCCTACTCCGATTCGTTGCAAACGAGCGACGGGGATTCCAGAACCGTTCAGGTGAAACTGATGCCGGAGTGCGCTGTCATATCAGCTTCCCGAACGCACGAGACCTACGCTTTGGTCTTAAAAGTGAAGGCTCCACCTCCGCCACCTCCACCGCGGAGTAGCGCCGCGCCGTCGCAGCGCGCGCCGATAGATCTCGTCACCGTGCTCGACGTCGGTGGAAGCATGACTGGCGCGAAGCTTCACATGCTAAAGCGCGCGATGCGTTTGGTTATCTCATCCCTCGGCCCTGCTGACAGACTCTCCATCGTGGCTTTCTCGGCCGCCTCGAAACGGCTCTTACCTTTGCGGAGAATGACGGCTCAAGGTCAGCGCGTGGCTCAGCGCATTGTTGACCGGCTTGTGATCGGTCAAGGCTCCGGCGTGGGCGATGCGTTGAGGAAAGCAACCCGAGTGCTGGAGGATCGCAGAGAGAGGAACCCGGTGGCGAGCGTCATGCTCTTATCGGACGGTCAAGAAGAGAGGGTTCAAAATCAAAGGGGTAATCATCAGCGGAAGTCGTCGAGCCACGTGTCGTCGACCCGGTTCGCTCATATCGAGATTCCGGTTCACGCGTTTGGGTTCGGGGCGAAAAGCGGTTACAGCCAGGAGCCGGGGGAGGACGCGTTCGCGAAGTGCGTGGGCGGGCTTCTGAGCGTGGTGGTGCAGGACCTGAGGATTCAAGTGGGCTTTGAGTCCGAGTCGGTTGAGATCAGCGCGATTTACTCGTGCAGCGGAAGGCCCACGCTGCTGAGCTCAGGGGCCGTGCGGCTCGGCGATTTGTACGCCGAGGAAGAGAGGGAGCTCTTGGTGGAGTTGAGAGTTCCCGCGTCAGGGACAGGGGCCCACCACGTGATGACGGTACGGTGCCTCTATAAGGACCCTGCTAGCCAGGAGATTGTATACGGTAGGGAACAGGGTCTTCTGGTGCCGCCGCCCCAGAGTTTGCGTTGTTCCGGTACTAGAATCCAGAGGCTCAGGAATCTCTTCATAACCACCCGAGCCATCGCCGAGTCGAGGAGGCTGGTAGAGCATAACGGTGACTTCACCAGCGCTCATCATTTGCTTGCCTCGGCGCGTGCGCTTCTCATTCAGTCTAATTCGGCTTCGGCTGAGGAATATGTGCGCGGCTTGGAGGCTGAGCTGGCAGATCTTCATTGGCGGAGACAGCATGAGCAGGTGCAGCAGCAAATGATGCAACAGAGGAGAAGAGGGAGCGAGAGAGAGGTGACTCTTGTGGACGAGAATGGCGAGCCGCTCACGCCGACGTCGGCTTGGAGAGCCGCGGAGAAGCTGGCTAAGATGGCCATGATGAAGAAGTCTTTGAATAGAGTCAGCGACTTGCACGGCTTCGAGAACGctaggttttaa | 2217 | 0.5805 | MGTGWRRAFCTRDPESTISDKQPGSPSPSPRSCTRLGFLSGGSNPSTPRLRCTTIAEPASQTVNESPRVQSTTTPRATKSPKTLAPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLAAESATQNDVAQRTADNPNASDKNPTENASPVFKTNNHVEPPKHSDSLRSSYDDDEPLLSPTSGGRIIPIPEADENAEEDDDEDAGEFQGFFVNPKNSSSSKSYSDSLQTSDGDSRTVQVKLMPECAVISASRTHETYALVLKVKAPPPPPPPRSSAAPSQRAPIDLVTVLDVGGSMTGAKLHMLKRAMRLVISSLGPADRLSIVAFSAASKRLLPLRRMTAQGQRVAQRIVDRLVIGQGSGVGDALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGNHQRKSSSHVSSTRFAHIEIPVHAFGFGAKSGYSQEPGEDAFAKCVGGLLSVVVQDLRIQVGFESESVEISAIYSCSGRPTLLSSGAVRLGDLYAEEERELLVELRVPASGTGAHHVMTVRCLYKDPASQEIVYGREQGLLVPPPQSLRCSGTRIQRLRNLFITTRAIAESRRLVEHNGDFTSAHHLLASARALLIQSNSASAEEYVRGLEAELADLHWRRQHEQVQQQMMQQRRRGSEREVTLVDENGEPLTPTSAWRAAEKLAKMAMMKKSLNRVSDLHGFENARF | 738 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu1g3215 | 738 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 219 | IPR013083 | - | |
Ssu1g3215 | 738 | ProSiteProfiles | Zinc finger RING-type profile. | 108 | 153 | IPR001841 | - | |
Ssu1g3215 | 738 | SMART | ring_2 | 108 | 152 | IPR001841 | - | |
Ssu1g3215 | 738 | ProSiteProfiles | VWFA domain profile. | 334 | 478 | IPR002035 | - | |
Ssu1g3215 | 738 | Pfam | RING-like zinc finger | 108 | 137 | IPR001841 | - | |
Ssu1g3215 | 738 | PANTHER | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR | 3 | 738 | - | - | |
Ssu1g3215 | 738 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE WAV3 | 3 | 738 | - | - | |
Ssu1g3215 | 738 | CDD | RING-H2 | 108 | 153 | - | - | |
Ssu1g3215 | 738 | CDD | vWA_C3HC4_type | 333 | 504 | - | - | |
Ssu1g3215 | 738 | Gene3D | von Willebrand factor, type A domain | 334 | 498 | IPR036465 | - | |
Ssu1g3215 | 738 | Pfam | von Willebrand factor type A domain | 335 | 441 | IPR002035 | - | |
Ssu1g3215 | 738 | MobiDBLite | consensus disorder prediction | 15 | 90 | - | - | |
Ssu1g3215 | 738 | MobiDBLite | consensus disorder prediction | 207 | 221 | - | - | |
Ssu1g3215 | 738 | SUPERFAMILY | vWA-like | 332 | 507 | IPR036465 | - | |
Ssu1g3215 | 738 | MobiDBLite | consensus disorder prediction | 260 | 284 | - | - | |
Ssu1g3215 | 738 | SMART | VWA_4 | 332 | 519 | IPR002035 | - | |
Ssu1g3215 | 738 | SUPERFAMILY | RING/U-box | 102 | 158 | - | - | |
Ssu1g3215 | 738 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
Ssu1g3215 | 738 | MobiDBLite | consensus disorder prediction | 441 | 460 | - | - | |
Ssu1g3215 | 738 | MobiDBLite | consensus disorder prediction | 171 | 284 | - | - | |
Ssu1g3215 | 738 | MobiDBLite | consensus disorder prediction | 171 | 203 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu1g3215 | Ssu-Chr1 | 83872940 | 83875255 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu1g3215 | 108 | 158 | C3H Transcription Factor Family | AT1G74410 | 41.176 | 9.67e-06 | 45.8 |