Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3215 ATGGGTACTGGTTGGAGAAGAGCCTTCTGCACCCGCGACCCCGAATCTACCATATCGGATAAACAGCCCGGAAGCCCAAGCCCGAGCCCAAGAAGCTGCACCCGATTGGGCTTTCTGTCCGGAGGGAGCAACCCCTCCACTCCACGCTTGCGCTGCACAACAATCGCTGAACCTGCTTCTCAAACAGTAAATGAGAGCCCCAGAGTTCAAAGCACGACCACCCCGAGAGCAACCAAGTCACCCAAAACCCTCGCACCAACTTCTCCGCGCTCCCCTCTCAAGCTCTCCCTCTTCAAGAACAGCTTCAAATTCAGgAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCGATTTACACTGCGGAATGCGGTCACGCGTTTCATTTCCCGTGTATCGCAGCGCATGTACGCAAGCATGGTAGCCTGGTGTGCCCCGTCTGCAACGCCACGTGGAAAGACGTGCCTCTGCTCGCGGCGCACAAGAACCTCGCTGCAGAATCCGCCACGCAAAACGACGTCGCGCAGAGGACCGCCGACAACCCCAATGCCAGCGACAAAAATCCAACAGAAAACGCCTCCCCCGTTTTCAAAACCAACAACCACGTGGAGCCACCGAAGCATTCCGATTCGCTCAGGTCCTCCTACGACGACGACGAACCCCTCCTCTCTCCCACCTCCGGCGGCCGGATTATTCCCATTCCCGAAGCCGACGAGAATGCGGAAGAAGACGACGACGAGGACGCCGGCGAGTTCCAAGGGTTCTTCGTCAATCCGAAGAACTCATCCTCGTCAAAATCCTACTCCGATTCGTTGCAAACGAGCGACGGGGATTCCAGAACCGTTCAGGTGAAACTGATGCCGGAGTGCGCTGTCATATCAGCTTCCCGAACGCACGAGACCTACGCTTTGGTCTTAAAAGTGAAGGCTCCACCTCCGCCACCTCCACCGCGGAGTAGCGCCGCGCCGTCGCAGCGCGCGCCGATAGATCTCGTCACCGTGCTCGACGTCGGTGGAAGCATGACTGGCGCGAAGCTTCACATGCTAAAGCGCGCGATGCGTTTGGTTATCTCATCCCTCGGCCCTGCTGACAGACTCTCCATCGTGGCTTTCTCGGCCGCCTCGAAACGGCTCTTACCTTTGCGGAGAATGACGGCTCAAGGTCAGCGCGTGGCTCAGCGCATTGTTGACCGGCTTGTGATCGGTCAAGGCTCCGGCGTGGGCGATGCGTTGAGGAAAGCAACCCGAGTGCTGGAGGATCGCAGAGAGAGGAACCCGGTGGCGAGCGTCATGCTCTTATCGGACGGTCAAGAAGAGAGGGTTCAAAATCAAAGGGGTAATCATCAGCGGAAGTCGTCGAGCCACGTGTCGTCGACCCGGTTCGCTCATATCGAGATTCCGGTTCACGCGTTTGGGTTCGGGGCGAAAAGCGGTTACAGCCAGGAGCCGGGGGAGGACGCGTTCGCGAAGTGCGTGGGCGGGCTTCTGAGCGTGGTGGTGCAGGACCTGAGGATTCAAGTGGGCTTTGAGTCCGAGTCGGTTGAGATCAGCGCGATTTACTCGTGCAGCGGAAGGCCCACGCTGCTGAGCTCAGGGGCCGTGCGGCTCGGCGATTTGTACGCCGAGGAAGAGAGGGAGCTCTTGGTGGAGTTGAGAGTTCCCGCGTCAGGGACAGGGGCCCACCACGTGATGACGGTACGGTGCCTCTATAAGGACCCTGCTAGCCAGGAGATTGTATACGGTAGGGAACAGGGTCTTCTGGTGCCGCCGCCCCAGAGTTTGCGTTGTTCCGGTACTAGAATCCAGAGGCTCAGGAATCTCTTCATAACCACCCGAGCCATCGCCGAGTCGAGGAGGCTGGTAGAGCATAACGGTGACTTCACCAGCGCTCATCATTTGCTTGCCTCGGCGCGTGCGCTTCTCATTCAGTCTAATTCGGCTTCGGCTGAGGAATATGTGCGCGGCTTGGAGGCTGAGCTGGCAGATCTTCATTGGCGGAGACAGCATGAGCAGGTGCAGCAGCAAATGATGCAACAGAGGAGAAGAGGGAGCGAGAGAGAGGTGACTCTTGTGGACGAGAATGGCGAGCCGCTCACGCCGACGTCGGCTTGGAGAGCCGCGGAGAAGCTGGCTAAGATGGCCATGATGAAGAAGTCTTTGAATAGAGTCAGCGACTTGCACGGCTTCGAGAACGctaggttttaa 2217 0.5805 MGTGWRRAFCTRDPESTISDKQPGSPSPSPRSCTRLGFLSGGSNPSTPRLRCTTIAEPASQTVNESPRVQSTTTPRATKSPKTLAPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLAAESATQNDVAQRTADNPNASDKNPTENASPVFKTNNHVEPPKHSDSLRSSYDDDEPLLSPTSGGRIIPIPEADENAEEDDDEDAGEFQGFFVNPKNSSSSKSYSDSLQTSDGDSRTVQVKLMPECAVISASRTHETYALVLKVKAPPPPPPPRSSAAPSQRAPIDLVTVLDVGGSMTGAKLHMLKRAMRLVISSLGPADRLSIVAFSAASKRLLPLRRMTAQGQRVAQRIVDRLVIGQGSGVGDALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGNHQRKSSSHVSSTRFAHIEIPVHAFGFGAKSGYSQEPGEDAFAKCVGGLLSVVVQDLRIQVGFESESVEISAIYSCSGRPTLLSSGAVRLGDLYAEEERELLVELRVPASGTGAHHVMTVRCLYKDPASQEIVYGREQGLLVPPPQSLRCSGTRIQRLRNLFITTRAIAESRRLVEHNGDFTSAHHLLASARALLIQSNSASAEEYVRGLEAELADLHWRRQHEQVQQQMMQQRRRGSEREVTLVDENGEPLTPTSAWRAAEKLAKMAMMKKSLNRVSDLHGFENARF 738
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3215 738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 219 IPR013083 -
Ssu1g3215 738 ProSiteProfiles Zinc finger RING-type profile. 108 153 IPR001841 -
Ssu1g3215 738 SMART ring_2 108 152 IPR001841 -
Ssu1g3215 738 ProSiteProfiles VWFA domain profile. 334 478 IPR002035 -
Ssu1g3215 738 Pfam RING-like zinc finger 108 137 IPR001841 -
Ssu1g3215 738 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 738 - -
Ssu1g3215 738 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 738 - -
Ssu1g3215 738 CDD RING-H2 108 153 - -
Ssu1g3215 738 CDD vWA_C3HC4_type 333 504 - -
Ssu1g3215 738 Gene3D von Willebrand factor, type A domain 334 498 IPR036465 -
Ssu1g3215 738 Pfam von Willebrand factor type A domain 335 441 IPR002035 -
Ssu1g3215 738 MobiDBLite consensus disorder prediction 15 90 - -
Ssu1g3215 738 MobiDBLite consensus disorder prediction 207 221 - -
Ssu1g3215 738 SUPERFAMILY vWA-like 332 507 IPR036465 -
Ssu1g3215 738 MobiDBLite consensus disorder prediction 260 284 - -
Ssu1g3215 738 SMART VWA_4 332 519 IPR002035 -
Ssu1g3215 738 SUPERFAMILY RING/U-box 102 158 - -
Ssu1g3215 738 MobiDBLite consensus disorder prediction 1 90 - -
Ssu1g3215 738 MobiDBLite consensus disorder prediction 441 460 - -
Ssu1g3215 738 MobiDBLite consensus disorder prediction 171 284 - -
Ssu1g3215 738 MobiDBLite consensus disorder prediction 171 203 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu1g3215 Ssu-Chr1 83872940 83875255 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3215 108 158 C3H Transcription Factor Family AT1G74410 41.176 9.67e-06 45.8
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3215 1 83872940 83875255 Ssu1g3215 1 83872940 83875255 ECH