Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3214 ATGTCTCCGCCAGTGCTGAGCATAGGGGAGGAGGAGGAGGGTAAAAGCAATGTGTCTTTGTTGGTTTCTTCTACCACCATGGAAAGTGTGTGCCTCAAGAGCTCAGAATTGAAAGAACGCAACTACATGGGATTATCTGATTGTTCTTCTGTGGACAGCTCAGTACCGTCCTTCTCGGAAGAGAGTAAAAGTAATCTGAACCTGAAAGCCACTGAACTCAGACTTGGGCTTCCAGGATCACAGTCTCCTGAAAGAGATTCTGGTCTCTGCTTAAGAAGCTCAACTCAATTTGATGAAAAGCCTCTATTTCCTTTGCGTCCTTTGACTGATGATCACCATTCTTCAGCCAAGACTGCTATTTTGGGAAACAAAAGAGGGTTCTCAGATGCCATGAATGGCTTCTCAGAGGGGAAATTCCTAGTTAATTCGGAGGCCAATCCTATACTGTCTCCCAGGCCTTCTTCTAACTTGGGATTAAAACCTGGTTCCACGCTTGAAAATGTTGGTGCTCAACAAACCAAGATCAAAGAAATAGCAACAACAAAGGTGGGACTAGATAGGCCTCGTGCTGCCAATGAAACCAGACCAAATCTTGATGGTTCTGCAAATAATAATAGCAGTGCACCTGCTACAAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTCAGGAAAAATTCATTGGCAACTAATTCAAAGAACACTGAAGAAGTTGATGGAAAAGTGGGGGTTGGTGCACTGTTCGTCAAGGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATATCCAGAATTATCTTCTGCTCTAGAAAAGATGTTCAGCTGTTTTACtataaGTCAATGTGGATCTCATGGAATTCTGGGCGGGGAGATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGAAGGCGATTGGATGCTGGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGTAAGAGCAGGAACTAG 1104 0.4393 MSPPVLSIGEEEEGKSNVSLLVSSTTMESVCLKSSELKERNYMGLSDCSSVDSSVPSFSEESKSNLNLKATELRLGLPGSQSPERDSGLCLRSSTQFDEKPLFPLRPLTDDHHSSAKTAILGNKRGFSDAMNGFSEGKFLVNSEANPILSPRPSSNLGLKPGSTLENVGAQQTKIKEIATTKVGLDRPRAANETRPNLDGSANNNSSAPATKAQVVGWPPIRSFRKNSLATNSKNTEEVDGKVGVGALFVKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTISQCGSHGILGGEMLNETKLKDLLHGSEYVLTYEDKEGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKSRN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3214 367 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 361 IPR003311 GO:0005634|GO:0006355
Ssu1g3214 367 Pfam AUX/IAA family 71 358 IPR033389 -
Ssu1g3214 367 PANTHER AUXIN-INDUCED PROTEIN 23 361 - -
Ssu1g3214 367 MobiDBLite consensus disorder prediction 185 213 - -
Ssu1g3214 367 SUPERFAMILY CAD & PB1 domains 246 348 - -
Ssu1g3214 367 Gene3D - 242 361 - -
Ssu1g3214 367 MobiDBLite consensus disorder prediction 196 212 - -
Ssu1g3214 367 ProSiteProfiles PB1 domain profile. 247 349 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3214 Ssu-Chr1 83805638 83809774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3214 250 352 B3 DNA Binding Superfamily AT2G46530 34.951 2.05e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu1g3214 AUX_IAA 3.8e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3214 K14484 - gmx:100783314 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3214 1 83805638 83809774 Ssu1g3214 1 83805638 83809774 ECH