Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3212 atggaGCTCTATGACCAGGATTTCTTGGAGGAACTAATGACTCTAAGAAGAGAAACATGGGACACCAATCCAAGCACAGAAGAAAACCAGTTCTTCCCTAATGGCTGGAGTTTTGACTCTTTTGATCAAAACTCTCTACCTTACCTCCCAAATTCTTCTTGTGGTCAAGAAGTTCCTCAGAGTTACAACAACGACTACCCCTTCAATGAAATCTATGGCTCCTTACTTGATGAATCCTCACCTCAGATCATCGATTCATACTATAGTACCCTTGATACTCCACTCAACACCTCTCCATTTCTTGGTCAAGATGATTATCCATTGTCCATGATGGAAGAAGAGGACCCGGGTTTCCTAGGGGAAGAACTTAAGAATTTGGAGCTGCAAACCACATGCAAAGTGGAGCCAACCCAATCCTCTGAAATGCCAGTTTTCAACATGGGAACGGGTCTGGAAAGAAAGAATCGATCAAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGcggagaggagaagaagaaagagattaaATGACCGCCTCTCAATGCTAAGAGCAATTGTCCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAATCTGCAACAAGAAGTAGAAGTAGATTCAAACATGGTAGGCATTTCAAAAGATGCAAAGCCAAACGAAATCCTAGTGAGAAATTCACCCAAGTTTGAGGTGAAGAAGAGTGTGGACACCCGGGTGGAAATTTGCTGTGCAGGGAAGCCAGGCTTGTTACTTTCTACAGTAAACACCCTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTCATTAGCTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTGGAGCGAAGGACAATGCTGAGTTCTGAAGATATAAAGCAAGCGTTATTTCGAAGTGCAGGGTATGGAGGAAGATGTTTGTGA 993 0.4129 MELYDQDFLEELMTLRRETWDTNPSTEENQFFPNGWSFDSFDQNSLPYLPNSSCGQEVPQSYNNDYPFNEIYGSLLDESSPQIIDSYYSTLDTPLNTSPFLGQDDYPLSMMEEEDPGFLGEELKNLELQTTCKVEPTQSSEMPVFNMGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEVEVDSNMVGISKDAKPNEILVRNSPKFEVKKSVDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELERRTMLSSEDIKQALFRSAGYGGRCL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3212 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Ssu1g3212 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983
Ssu1g3212 330 SMART finulus 168 217 IPR011598 GO:0046983
Ssu1g3212 330 CDD ACT_UUR-ACR-like 256 297 - -
Ssu1g3212 330 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 330 - -
Ssu1g3212 330 Gene3D - 170 244 IPR036638 GO:0046983
Ssu1g3212 330 Coils Coil 201 228 - -
Ssu1g3212 330 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Ssu1g3212 330 MobiDBLite consensus disorder prediction 153 174 - -
Ssu1g3212 330 PANTHER DNA BINDING PROTEIN 3 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3212 Ssu-Chr1 83747827 83749168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3212 29 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 48.077 2.05e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g3212 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3212 - - gmx:100812578 608.986