Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3209 atgGTGGTGAGGAAAGTGGGGAAGTACGAGATTGGGAGGACGATTGGGGAGGGAACCTTTGCGAAGGTGAAGTTCGCTCAGAACACAGAAACTGGCGAGAGCGTGGCCATGAAGGTGCTCGACCGTAGCACCATCATCAAGCACAAGATGGTCGACCAGATCAAGAGGGAGATTTCCATTATGAAGCTAGTTAGGCATCCTTATGTTGTTCGCCTTCACGAGgtTCTTGCAAGCCGTACTAAGATTTATATCATATTGGAGTTCATCACGGGTGGtgaattgtttgataaaattATACACCATGGCCGACTTAGTGAAGCTGACTCTAGAAGATATTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCACAGAGATTTAAAGCCTGAAAATCTTTTACTTGATTCACTAGGAAATATAAAGATTTCAGATTTTGGTTTGAGCGCATTGCCTGAACAGGGGGTGAGTATCCTTCGGACAACTTGTGGGACTCCAAACTATGTAGCTCCCGAGGTACTCAGTCATAAGGGTTACAATGGTGCTGTGGCAGATGTTTGGTCCTGTGGGGTTATCCTCTATGTCCTACTGGCTGGATATCTTCCCTTTGATGAACTTGATCTAACCACCTTATATAGTAAGATTGAGAAAGCAGATTTTTCATGCCCTCCTTGGTTTCCTGTGGGAGCAAAAATGTTGATACGTAGAATTTTGGACCCAAATCCTGAAACCCGTATAACCATTGAGCAGATAAGAAATGACGAATGGTTTCAGAGGAGCTATGTTCCTGTCAGTCTTCTCGAGTATGAAGATGTAAATCTTGATGATGTAAATGCTGCTTTGGATGATGCTGAGGAACAGAGGGCCGATCAACAATGTGATAACGAGGACATGGGTCCTTTAATACTTAATGCATTTGACTTGATAATTCTGTCTCAAGGCTTAAATCTTGCAACAATCTTTGATCGTGGGCAGGACTCTGTGAAGTACCAAACCCGCTTTATCTCTCAAAAGCCAGCAAAAGTGGTTTTATCAAGTATGGAAGTTGTGGCACAGTCAATGGGATTTAAGACACACATTCGCAACTACAAGatGAGGGTAGAGGGTATTTCAGCAAATAAAACATCCTATTTCTCGGTTATCCTGGAAATTTTTGAAGTGGCTCCTACATTTTATATGGTGGACATTCAGAAAGCAGCTGGAGATACTGGTGAATACCTCAAGTTTTACAAGAACTTTTGTAGCAATCTTGAGGATATAATCTGGAAGCCGCCTCATGAAGCAAGCAAATCAAGGATCTCCAAGACCAAAAGCAAAAGACGATAG 1341 0.4191 MVVRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIIHHGRLSEADSRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNIKISDFGLSALPEQGVSILRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLLAGYLPFDELDLTTLYSKIEKADFSCPPWFPVGAKMLIRRILDPNPETRITIEQIRNDEWFQRSYVPVSLLEYEDVNLDDVNAALDDAEEQRADQQCDNEDMGPLILNAFDLIILSQGLNLATIFDRGQDSVKYQTRFISQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGISANKTSYFSVILEIFEVAPTFYMVDIQKAAGDTGEYLKFYKNFCSNLEDIIWKPPHEASKSRISKTKSKRR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3209 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Ssu1g3209 446 Gene3D Kinase associated domain 1, KA1 307 428 - -
Ssu1g3209 446 PANTHER - 2 443 - -
Ssu1g3209 446 Coils Coil 272 299 - -
Ssu1g3209 446 CDD CIPK_C 309 424 - -
Ssu1g3209 446 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Ssu1g3209 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3209 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Ssu1g3209 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3209 446 Pfam NAF domain 305 363 IPR004041 GO:0007165
Ssu1g3209 446 SUPERFAMILY Protein kinase-like (PK-like) 6 276 IPR011009 -
Ssu1g3209 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Ssu1g3209 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3209 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3209 Ssu-Chr1 83664167 83669620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3209 1 388 CBL-interacting serine-threonine protein kinases AT4G24400 83.505 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu1g3209 Pkinase 7.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3209 - - gmx:100785444 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3209 1 83664167 83669620 Ssu1g3209 1 83664167 83669620 ECH