Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3204 ATGTCCGGCACAGGGGTACGGTTGCACATCCAAGATCACCATGTGGTGATGGAAAATGGCATACTCCAAGTTACGTTATCAAATCCAGATGGAATTGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAAAGAGTCTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCGCCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACGTGTTTTGAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACAAGAATGTGGGATCCTTCTCTAGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTCATAATGCTCAGTGGTTCATCAGGCTTCTACTCTTATGCAATTTATGAGCACTTAAGTGGATGGCCAGATTTTGATCTTAGCGAAACAAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGGCAGAGGATTATGCCTTTTCCAGAAGACCGGTTACCAGGAAGATGCCAAACCTTGGGCTATCCAGAAGCTGTCCTACTAGTCAATCCCAAGGATCCACGATTGAAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGTAAACATGGATAATCGAGTCCATGGGTGGATATCTTTCAGTCCACCAGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCACACGTTGGCCCCACCACACTTGCAATGTTTCTTAGTGGTCATTATGCGGGACAAGATTTGGTGCCTAAATTTAGAGGTGGTGAATCATGGAAGAAGGTTTTTGGTCctgtatatatttatcttaattctGGATCAGTGGGTGATGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATTATTTCCCAGCCTCACAGGATTTTTTAAAATCGGATCAACGGGGGCAACGTCAGTGGCAGATTACTTGTCTTAGACTGGTACATCTGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGCCTGGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGA 1152 0.428 MSGTGVRLHIQDHHVVMENGILQVTLSNPDGIVTGIRYNGVDNLLEVLNKESNRGYWDLVWSAPGSKGIFDVIKGTCFEVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMLSGSSGFYSYAIYEHLSGWPDFDLSETRITFKLRKDKFQYMAMADNRQRIMPFPEDRLPGRCQTLGYPEAVLLVNPKDPRLKGEVDDKYQYSCVNMDNRVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGESWKKVFGPVYIYLNSGSVGDDPLWLWEDAKIQMMNEVQSWPYYFPASQDFLKSDQRGQRQWQITCLRLVHLHRLNISKWCLCWPGPTWRCRVMAKRMQGLSILDQSR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3204 383 CDD RGL4_N 6 293 - -
Ssu1g3204 383 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 336 - -
Ssu1g3204 383 Gene3D - 7 306 IPR014718 GO:0030246
Ssu1g3204 383 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 336 - -
Ssu1g3204 383 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Ssu1g3204 383 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3204 Ssu-Chr1 83597878 83603241 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3204 1 339 Polysaccharide Lyase AT1G09910 71.976 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3204 K18195 - gmx:100814185 665.611