Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3203 ATGAAGATAACATCAGGTTCTTGCATTGAATTGGGTGAACTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCTGCAGAATTTTATGTTCCTGATCCCAATCCACAACATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTATACAGAATTGTATCCTGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTATACGAAAGATTGGTTTTTTGCACAGGCTCCGAGAAAAAAAGAGGATAACACTCATCAAGGAACAACTTGGCAAATCAAGTTCGAAATCAGTAGTGTGGTTCAGGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAATAAATGATCCCAATGCAAGGCGACCCCTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCACGGACTCTATTGGCTGTACGATGTGAACATACCAGGTTCTCTTCTTATTGATGGCACAAATACCATATATTTTACGCAACCAAGATGCACCAGTCCCTTCCAGGGCATTATGTATGATTATATTCGTTTGGAAGGCCCACCTTGCGCAGAAACTTTAGTTAACCTTGGGAaataa 681 0.4053 MKITSGSCIELGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQHINKLFINHPDRFRQYGLWDRYTELYPDADLVYTIGVSDYTKDWFFAQAPRKKEDNTHQGTTWQIKFEISSVVQGSTYKLRVAIASATLAELQIRINDPNARRPLFTSGLIGRDNSIARHGIHGLYWLYDVNIPGSLLIDGTNTIYFTQPRCTSPFQGIMYDYIRLEGPPCAETLVNLGK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3203 226 Pfam Polysaccharide lyase family 4, domain III 24 212 IPR029411 -
Ssu1g3203 226 CDD RGL4_C 26 213 - -
Ssu1g3203 226 Gene3D - 22 213 - -
Ssu1g3203 226 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 218 - -
Ssu1g3203 226 SUPERFAMILY Galactose-binding domain-like 21 213 IPR008979 -
Ssu1g3203 226 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3203 Ssu-Chr1 83596506 83597780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3203 1 216 Polysaccharide Lyase AT1G09910 70.370 9.12e-113 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3203 K18195 - gmx:100814185 431.024