Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3202 ATGCCACAACTGGGGGTGCAACTTACTATTCAAGATCGTCATGTGGTGATGGACAATGGCATACTAAAAGTCACTTTATCAAATCCAGGGGGAATTGTGACTGGAATACAGTATAATGGCATCGACAACTTGCTTGAAGTTTTGAATGAAGAATCTAACAGAGGGTATTGGGACCTTGTTTGGAGCTCACCGACCTCTAGTGGTACATTTGATGTCATCAAAGGAACAACTTTCAAAGTTGTAGTTGAAAATGAGGACCAAGTTGAGGTATCCTTCACCAGGACGTGGGACGCCTCTCTCGAGGGCAAGATGGTTCCTTTAAATATTGACAAAAGGTTCATAATGCTCCGTGGTTCTTCCGGCTTCTACTCCTATGCTATTTATGAGCACTTGGAGGATTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTTTTCCAGATGACCGATTACCACCTAGGGGCCAAGCCCTTGCCTACCCAGAGGCAGTTCTACTTGTCAATCCCATCGAGCCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAACCAAGTTCATGGATGGATTTGCATGGATCCCGCAATGGGATTCTGGCAAATTACACCCAGCAATGAGTTTCGATCTGGTGGACCCGTCAAACAAAACTTAACTTCCCATGTGGGGCCTACCACACTTGCTATGTTTCTGAGTGCTCATTATAGCGGAGATGATCTGATTCCTAAGTTCAAAGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCcagttttcatttatttgaattcttCGTACGACTGGAGATTTTCTAACATAGCTAACGTAGTGACACAAGCACATGCCAAACCAAATTTACAGATGCTGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGATTTCGCAAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTTTTGGTTAAAGAGAGGTATATAAACGATGACTATATATCAGCAAAAGGTGCTTATGTTGGCTTGGCACCACCAGGAGACGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCCAAAGCAGACGATGATGGCTACTTCTCCATCAGCAATATACGTGCTGGCGACTACAATGTTTACGCGTGGGTACCTGGTTTTATTGGTGACTATAAATACGACGTAGTTATGAACATAACAGAAGGTTGTGCCATCGACCTTGGTGATCTTGTGTATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATTGGCATTCCTGATCGCTCAGCTGCTGAGTTCTGGGTCCCTGATCCAAATCCCAAATACATCAACAAACTCTATGTTAATCATCCAGACAAGTTTAGGCAATATGGGCTATGGGAGAGATATGCAGAGCTATACCCTGACAACGACTTGATCTACACAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATTAAGTTTCAGCTTGATAATGTGAACAAAAGCAGTAGCTATAAACTGCGAGTGGCTTTGGCATCGGCAACATTAGCTGAACTTCAGgttCGAGTTAATAATCCAAAGGCGACTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCTAGGCACGGAATTCATGGACTTTATTGGCTTTACAATGTAGACATACCGGGTGCTCAACTTGTTGAAGGAGATAATACCATCTTTTTGACACAGACTAGAGGCAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAAGTCCACCGTCGTCTagctttaataagaaaatttga 1941 0.4214 MPQLGVQLTIQDRHVVMDNGILKVTLSNPGGIVTGIQYNGIDNLLEVLNEESNRGYWDLVWSSPTSSGTFDVIKGTTFKVVVENEDQVEVSFTRTWDASLEGKMVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPFPDDRLPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDNQVHGWICMDPAMGFWQITPSNEFRSGGPVKQNLTSHVGPTTLAMFLSAHYSGDDLIPKFKAGEAWKKVFGPVFIYLNSSYDWRFSNIANVVTQAHAKPNLQMLVEVQSWPYSFPESEDFAKWDERGNVSGRLLVKERYINDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVMNITEGCAIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFWVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDNDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLDNVNKSSSYKLRVALASATLAELQVRVNNPKATRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPGAQLVEGDNTIFLTQTRGNGPFQAIMYDYIRLESPPSSSFNKKI 646
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3202 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 640 - -
Ssu1g3202 646 Gene3D - 444 635 - -
Ssu1g3202 646 Gene3D - 5 299 IPR014718 GO:0030246
Ssu1g3202 646 Pfam Polysaccharide lyase family 4, domain III 446 634 IPR029411 -
Ssu1g3202 646 CDD RGL4_C 448 635 - -
Ssu1g3202 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 640 - -
Ssu1g3202 646 SUPERFAMILY Starch-binding domain-like 380 423 IPR013784 GO:0030246
Ssu1g3202 646 SUPERFAMILY Galactose mutarotase-like 8 292 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ssu1g3202 646 Pfam Rhamnogalacturonate lyase family 6 200 IPR010325 -
Ssu1g3202 646 CDD RGL4_M 337 436 IPR029413 -
Ssu1g3202 646 Pfam Polysaccharide lyase family 4, domain II 360 432 IPR029413 -
Ssu1g3202 646 Gene3D - 336 428 - -
Ssu1g3202 646 CDD RGL4_N 8 292 - -
Ssu1g3202 646 SUPERFAMILY Galactose-binding domain-like 443 635 IPR008979 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu1g3202 Ssu-Chr1 83589200 83594099 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3202 1 637 Polysaccharide Lyase AT1G09890 69.255 0.0 942
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3202 K18195 - gmx:100793563 1228.77
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3202 1 83589200 83594099 Ssu1g3202 1 83589200 83594099 ECH