Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu1g3202 | ATGCCACAACTGGGGGTGCAACTTACTATTCAAGATCGTCATGTGGTGATGGACAATGGCATACTAAAAGTCACTTTATCAAATCCAGGGGGAATTGTGACTGGAATACAGTATAATGGCATCGACAACTTGCTTGAAGTTTTGAATGAAGAATCTAACAGAGGGTATTGGGACCTTGTTTGGAGCTCACCGACCTCTAGTGGTACATTTGATGTCATCAAAGGAACAACTTTCAAAGTTGTAGTTGAAAATGAGGACCAAGTTGAGGTATCCTTCACCAGGACGTGGGACGCCTCTCTCGAGGGCAAGATGGTTCCTTTAAATATTGACAAAAGGTTCATAATGCTCCGTGGTTCTTCCGGCTTCTACTCCTATGCTATTTATGAGCACTTGGAGGATTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTTTTCCAGATGACCGATTACCACCTAGGGGCCAAGCCCTTGCCTACCCAGAGGCAGTTCTACTTGTCAATCCCATCGAGCCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAACCAAGTTCATGGATGGATTTGCATGGATCCCGCAATGGGATTCTGGCAAATTACACCCAGCAATGAGTTTCGATCTGGTGGACCCGTCAAACAAAACTTAACTTCCCATGTGGGGCCTACCACACTTGCTATGTTTCTGAGTGCTCATTATAGCGGAGATGATCTGATTCCTAAGTTCAAAGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCcagttttcatttatttgaattcttCGTACGACTGGAGATTTTCTAACATAGCTAACGTAGTGACACAAGCACATGCCAAACCAAATTTACAGATGCTGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGATTTCGCAAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTTTTGGTTAAAGAGAGGTATATAAACGATGACTATATATCAGCAAAAGGTGCTTATGTTGGCTTGGCACCACCAGGAGACGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCCAAAGCAGACGATGATGGCTACTTCTCCATCAGCAATATACGTGCTGGCGACTACAATGTTTACGCGTGGGTACCTGGTTTTATTGGTGACTATAAATACGACGTAGTTATGAACATAACAGAAGGTTGTGCCATCGACCTTGGTGATCTTGTGTATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATTGGCATTCCTGATCGCTCAGCTGCTGAGTTCTGGGTCCCTGATCCAAATCCCAAATACATCAACAAACTCTATGTTAATCATCCAGACAAGTTTAGGCAATATGGGCTATGGGAGAGATATGCAGAGCTATACCCTGACAACGACTTGATCTACACAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATTAAGTTTCAGCTTGATAATGTGAACAAAAGCAGTAGCTATAAACTGCGAGTGGCTTTGGCATCGGCAACATTAGCTGAACTTCAGgttCGAGTTAATAATCCAAAGGCGACTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCTAGGCACGGAATTCATGGACTTTATTGGCTTTACAATGTAGACATACCGGGTGCTCAACTTGTTGAAGGAGATAATACCATCTTTTTGACACAGACTAGAGGCAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAAGTCCACCGTCGTCTagctttaataagaaaatttga | 1941 | 0.4214 | MPQLGVQLTIQDRHVVMDNGILKVTLSNPGGIVTGIQYNGIDNLLEVLNEESNRGYWDLVWSSPTSSGTFDVIKGTTFKVVVENEDQVEVSFTRTWDASLEGKMVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPFPDDRLPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDNQVHGWICMDPAMGFWQITPSNEFRSGGPVKQNLTSHVGPTTLAMFLSAHYSGDDLIPKFKAGEAWKKVFGPVFIYLNSSYDWRFSNIANVVTQAHAKPNLQMLVEVQSWPYSFPESEDFAKWDERGNVSGRLLVKERYINDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVMNITEGCAIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFWVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDNDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLDNVNKSSSYKLRVALASATLAELQVRVNNPKATRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPGAQLVEGDNTIFLTQTRGNGPFQAIMYDYIRLESPPSSSFNKKI | 646 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu1g3202 | 646 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 640 | - | - | |
Ssu1g3202 | 646 | Gene3D | - | 444 | 635 | - | - | |
Ssu1g3202 | 646 | Gene3D | - | 5 | 299 | IPR014718 | GO:0030246 | |
Ssu1g3202 | 646 | Pfam | Polysaccharide lyase family 4, domain III | 446 | 634 | IPR029411 | - | |
Ssu1g3202 | 646 | CDD | RGL4_C | 448 | 635 | - | - | |
Ssu1g3202 | 646 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 640 | - | - | |
Ssu1g3202 | 646 | SUPERFAMILY | Starch-binding domain-like | 380 | 423 | IPR013784 | GO:0030246 | |
Ssu1g3202 | 646 | SUPERFAMILY | Galactose mutarotase-like | 8 | 292 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Ssu1g3202 | 646 | Pfam | Rhamnogalacturonate lyase family | 6 | 200 | IPR010325 | - | |
Ssu1g3202 | 646 | CDD | RGL4_M | 337 | 436 | IPR029413 | - | |
Ssu1g3202 | 646 | Pfam | Polysaccharide lyase family 4, domain II | 360 | 432 | IPR029413 | - | |
Ssu1g3202 | 646 | Gene3D | - | 336 | 428 | - | - | |
Ssu1g3202 | 646 | CDD | RGL4_N | 8 | 292 | - | - | |
Ssu1g3202 | 646 | SUPERFAMILY | Galactose-binding domain-like | 443 | 635 | IPR008979 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu1g3202 | Ssu-Chr1 | 83589200 | 83594099 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu1g3202 | 1 | 637 | Polysaccharide Lyase | AT1G09890 | 69.255 | 0.0 | 942 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu1g3202 | K18195 | - | gmx:100793563 | 1228.77 |