Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3201 ATGGACTTCACTAATCGCTTCATGTTCTTGATGCTGCAATTCATCGTGGTTCTGGGTTGTACTAAACCAGGGGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTCAACTTATCAAATCCTGAAGGAATTGTCACGGCAATTCAATATAATGGACTCGACAATTTGCTCGAAGTTCTTAACGAAGAATATGACAGAGGGTACTGGGATATCGTATGGGACGAAGGTGGGgaaaaaagaaccaaaaaaggAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACGAATTTTACGGTGATAGTGGAAAATGAGGAGCAAGTAGAGCTATCTTTCACAAGAACATGGAATGCCACTCTTGAGGGGAAGCTTGCGCCACTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCCTCTGGGTTCTACACTTATGCCATTTACGAGCATTTGAAGGAGTGGCCAGCTTTCGATCTTGACAATACTAGGATCGCATTCAAGCCTAGGAAAGACAAGTTCCGTTACATGGTTATAGCAGACGACAGACAAAGATTTATGCCTCTGCCTGATGACCGGTCACCCCCAAGAGGTCAAGTTCTGGCCTACCCTGAGGCTGTGCGCCTTGTTGATCCCGTGGAGCCTGAATTCAAAGGAGAGGTAGATGACAAATATCAGTACGCGTGCGAGAGCCGATACAACCGTGTTCACGGTTGGATATGCATTGATCCATCGAATTCCACTGGATTCTGGCTAATTTCGCCAAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCACGTTGGCCCCACCACACTCTCTGTGTTTCATAGCACACATTATTCAGGGGTGGATCTGATAATGAAATTTGGGCCCAATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTTATATACCTTAATTCTCTATCTAACGGGTTTAGCCCGATCGGGCTCTGGGAGGATGCCAAACAACAGaTGGTCAATGAAGTTGAAAGCTGGCCCTATACGTTTCCAGCTTCCGAGGACTTTCTCTCATCCGGCCAACGAGGTAAAGTCGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGTGATGCATTCATCCCAGTTAGCGGTGCTTTTGTGGGACTAGCAGCCATAGGAGATGTTGGATCTTGGCAAAGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGctatttctcaattattaacATACTCCCCGGGGACTATAATCTCTACTCCTGGGTCACTGGATACATTGGTGATTATCAATTCGATAGTGTCGTCAACGTAACTTCAGGTTGCGCAATTAATGTGGATGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGCATGCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGAACCAAATCCCATGTACATTAACAGACTCTATGTCAACCATCCAGACAGGTATAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAAGACAATGACACTTACCAAGGAACCACATGGCAAATTAATTTCAAGCTGGATTGTGTGAATACCAATGGAACCTACATATTGCGAGTGGCTCTGGCATCTGTGCATTCTGCTGAGTTACAGATTCGGATAAACAATTTAGAAGCAAATCCACCTTTATTTTCAAGTGGAGTAATTGGAAAGGAGAATACTATAGCTAGACATGGAATTCACGGGCTCTACTGGCTTTACAGCATTGATGTACAAGGCACTCTTCTTGTGCAGGGGAACAATACTATCTTTCTAACGCAAACAAGAAACACAAGTCCTTTTATAGGAATTCTGTATGATTATATTCGTTTAGAATACAAACGGTGA 1989 0.4289 MDFTNRFMFLMLQFIVVLGCTKPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTAIQYNGLDNLLEVLNEEYDRGYWDIVWDEGGEKRTKKGAKGKGRFDRMEATNFTVIVENEEQVELSFTRTWNATLEGKLAPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKDKFRYMVIADDRQRFMPLPDDRSPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYQYACESRYNRVHGWICIDPSNSTGFWLISPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGVDLIMKFGPNEPWKKVYGPIFIYLNSLSNGFSPIGLWEDAKQQMVNEVESWPYTFPASEDFLSSGQRGKVEGRLLVRDRYISDAFIPVSGAFVGLAAIGDVGSWQRECKGYQFWTITDDKGYFSIINILPGDYNLYSWVTGYIGDYQFDSVVNVTSGCAINVDELVYEPPRDGPTLWEIGMPDRSAAEFYVPEPNPMYINRLYVNHPDRYRQYGLWERYADLYPNEDLVYTVGISDYRKDWFFAQVNRKKDNDTYQGTTWQINFKLDCVNTNGTYILRVALASVHSAELQIRINNLEANPPLFSSGVIGKENTIARHGIHGLYWLYSIDVQGTLLVQGNNTIFLTQTRNTSPFIGILYDYIRLEYKR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3201 662 SUPERFAMILY Galactose-binding domain-like 467 660 IPR008979 -
Ssu1g3201 662 CDD RGL4_C 472 659 - -
Ssu1g3201 662 Pfam Polysaccharide lyase family 4, domain III 470 658 IPR029411 -
Ssu1g3201 662 Gene3D - 358 458 - -
Ssu1g3201 662 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Ssu1g3201 662 Gene3D - 468 659 - -
Ssu1g3201 662 CDD RGL4_N 30 321 - -
Ssu1g3201 662 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 662 - -
Ssu1g3201 662 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 662 - -
Ssu1g3201 662 Pfam Rhamnogalacturonate lyase family 25 228 IPR010325 -
Ssu1g3201 662 SUPERFAMILY Starch-binding domain-like 360 459 IPR013784 GO:0030246
Ssu1g3201 662 CDD RGL4_M 361 457 IPR029413 -
Ssu1g3201 662 Pfam Polysaccharide lyase family 4, domain II 384 456 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3201 Ssu-Chr1 83549030 83553933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3201 25 659 Polysaccharide Lyase AT1G09890 64.577 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3201 K18195 - gmx:100786488 1266.52