Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3200 atgctGAGCTTCAGCCAGCGTCCTCCACTAACCAGTCTGTCCCTCTTAATGCTAACACAAAAACGCCACCACCGCCACTCTCGCGCGCACATGGGTGCTGGACCTTCCTTCACCCTAACATGTCTCTCCTTCGCTCTCATTCTATTCCTCACACATGCAGCAGAGAGCAGAGAAACACCACCCCCAACTCCCAATCTCGTTGCTCCGCCGCCGCCGGACAGCCCCTCCTCGCCGCCGTTCCGACCAGGCATAGCGGTGTTGGTGTGCGTTATGACCACCATTTTTTCCCTCACGTCCCTCCTCCTCCTCTACTTCAAACACTGCAACGGCGGCAACACCGACGGCGGCGGCGGGAACTCGACCACGTGGACGGCGGCGCCTTTCCCCGGAAGGAAGAACTCCGGCATTGACCGCTCCGTGGTGGAGTCGTTACCGGTCTTCCGATTCGGGGCGCTGCGCGGCCAAAAGGACGGGCTCGATTGCGCGGTCTGCCTGACCAAGTTCGAAGCCGCGGAGGTTCTCCGGCTGTTGCCGAAGTGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACGTGGCTCGACGCGCATTCCACGTGTCCCCTCTGCCGTAACCGCGTCGATCCGGAGGACATTCTTCTGGTGGAGGACGCAAAGCCTTTCCGCCAAACTCAGCGGAACAACAACGGACAGGAATGTTTGGACCTCGAGAAACAGGAGATTGTAGAGTCTCGGCGGAGGCATTCGTCCGTGGGGGAAAGTGAAACGGAGGAGCAGGGTCGGAGGTGGACGACGTCGTTTAGAAGGTCGTTGGATAGCGCGACATCGAAAAAGAAGAGCGAAGGCGCGGTTGGCGTTGGTTGCTTTGTCCGTCCCAGAAAAGACGGGATGTTGTTGACGCAAGACGCGGAGAGAGAGCGGGACAGGACAAGCGTGGAACGGAGGCTAGAACACCGGATCATTGTCTCCCCGGGCCCGGGCCCGGGCCCAGGAACGCAGTATGGGCTCCAGCAGCGGTGGAGCGATGCGCAAGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGAGCGAGGCGCAATGGAACACGCGCCGCGGAGGAAGAAGAGGGACGCGCCGTACTAATGATGATGAGATGGTTCAGAGTGGCAGGGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCTCCAGCGATAGAGAGTgggaacaacaacaacaacgacagGGGcatggagagagagaggaggggTTAGTGAGGAGGTGGTTGGGTTGGATTTCAAAGTCACGCACACAACCAGCTGTACGGTAG 1326 0.5694 MLSFSQRPPLTSLSLLMLTQKRHHRHSRAHMGAGPSFTLTCLSFALILFLTHAAESRETPPPTPNLVAPPPPDSPSSPPFRPGIAVLVCVMTTIFSLTSLLLLYFKHCNGGNTDGGGGNSTTWTAAPFPGRKNSGIDRSVVESLPVFRFGALRGQKDGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRNRVDPEDILLVEDAKPFRQTQRNNNGQECLDLEKQEIVESRRRHSSVGESETEEQGRRWTTSFRRSLDSATSKKKSEGAVGVGCFVRPRKDGMLLTQDAERERDRTSVERRLEHRIIVSPGPGPGPGTQYGLQQRWSDAQASDLLYLTSEMIMSEAQWNTRRGGRRGTRRTNDDEMVQSGRGIINSRSVSEITGLSRFSSDREWEQQQQRQGHGEREEGLVRRWLGWISKSRTQPAVR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3200 441 MobiDBLite consensus disorder prediction 56 77 - -
Ssu1g3200 441 MobiDBLite consensus disorder prediction 62 77 - -
Ssu1g3200 441 PANTHER RING-H2 FINGER PROTEIN ATL43 56 436 - -
Ssu1g3200 441 SMART ring_2 161 202 IPR001841 -
Ssu1g3200 441 MobiDBLite consensus disorder prediction 243 277 - -
Ssu1g3200 441 MobiDBLite consensus disorder prediction 406 420 - -
Ssu1g3200 441 MobiDBLite consensus disorder prediction 400 420 - -
Ssu1g3200 441 Pfam Ring finger domain 160 203 IPR001841 -
Ssu1g3200 441 MobiDBLite consensus disorder prediction 243 264 - -
Ssu1g3200 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 210 IPR013083 -
Ssu1g3200 441 SUPERFAMILY RING/U-box 143 208 - -
Ssu1g3200 441 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Ssu1g3200 441 CDD RING-H2_EL5_like 160 203 - -
Ssu1g3200 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 56 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3200 Ssu-Chr1 83538893 83540218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3200 82 440 C3H Transcription Factor Family AT5G05810 45.128 4.74e-79 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3200 K19041 - gmx:100794083 450.669