Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3198 ATGAAAGGGGAATACGTAGAGCAACAACAACATCCTAAGAGCGAAACACCACCTAGTATGTTCGCAAAGCTTCAACCCCAACACCACCCGTTCCCTCACCACCCTTTCCAACTCTCCGCGGAGGACGATACCCGCAGCGGCGCCGCCACGCCGAGCATCGCCCAGAAGCCGAACTCCTCCGGCGGCGACGGCGCGACCATCGAGATGGTGCGGCGTCCGCGGGGCCGTCCACCCGGGTCGAAAAACAAGCCCAAGCCACCCGTTATCATAACCCGTGACCCGGAACCCGCTATGAGTCCCTACATTCTCGAAGTGTCTGGAGGAAACGACGTCGTCGAGGCCATCGCGCAGTTCAGTCGCCGCAAGAACATGGGCATCTGCGTCCTCACGGGGTCCGGAGCCGTCGCTAACGTCACGCTCCGTCAACCCTCCACCACGCCCGGCGCCACCGTTACTTTTCACGGCCGTTTCGATATTCTTTCCATCTCCGCCACCTTCCTTCCGCAGCAGTCGGGCGCCTCGCCGGCAGTTCCCAACGGCTTCGCCATCTCGCTCGCCGGACCGCAGGGGCAGATCGTCGGAGGACTGGTCGCCGGCGGGTTGATGGCCGCGGGGACGGTGTTTGTGATCGCCGCTTCGTTCAACAACCCGGTGTACCACAGGCTGCCGCCGGAGGACGAGGGTGCCTCCGCCGGCGATGGACATTCGCCGCCAGTCTCCGGCGGCGGAGAAAGCGGGCATGGACAGGCAGAGTCGTGTGGAATGTCCATGTACAGCTGTCACTTGCCCTCTGATGTGATTTGGGCTCCAACGGCTAGACCaccgccgccgccaccacctTACTGA 846 0.6147 MKGEYVEQQQHPKSETPPSMFAKLQPQHHPFPHHPFQLSAEDDTRSGAATPSIAQKPNSSGGDGATIEMVRRPRGRPPGSKNKPKPPVIITRDPEPAMSPYILEVSGGNDVVEAIAQFSRRKNMGICVLTGSGAVANVTLRQPSTTPGATVTFHGRFDILSISATFLPQQSGASPAVPNGFAISLAGPQGQIVGGLVAGGLMAAGTVFVIAASFNNPVYHRLPPEDEGASAGDGHSPPVSGGGESGHGQAESCGMSMYSCHLPSDVIWAPTARPPPPPPPY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3198 281 Gene3D - 99 233 - -
Ssu1g3198 281 MobiDBLite consensus disorder prediction 1 94 - -
Ssu1g3198 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 279 IPR014476 GO:0003680
Ssu1g3198 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 229 - -
Ssu1g3198 281 MobiDBLite consensus disorder prediction 43 62 - -
Ssu1g3198 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 216 IPR005175 -
Ssu1g3198 281 ProSiteProfiles PPC domain profile profile. 95 235 IPR005175 -
Ssu1g3198 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 16 279 - -
Ssu1g3198 281 PIRSF ESCAROLA 8 268 IPR014476 GO:0003680
Ssu1g3198 281 CDD DUF296 100 214 IPR005175 -
Ssu1g3198 281 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3198 Ssu-Chr1 83474302 83475147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3198 1 277 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 58.419 8.84e-103 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3198 - - gmx:100788098 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3198 1 83474302 83475147 Ssu1g3198 1 83474302 83475147 ECH