Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3188 ATGGTAGAAAAGCTAGGCAGAGAGCAGTACGTGTACCTGGCGAAGCTGTCGGAGCAGGCGGAGCGGTACGAGGAGATGGTGGAGTTCATGCAGAAGGTGGTGGTGGGGTGGACGCCGGCGTCGGAGCTGAGCGTGGAGGAGCGGAACCTGCTGTCGGTGGCCTACAAGAACGTGATCGGGTCGCTGCGTGCGGCGTGGCGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGTCGGAAGAACGAGGAGCACGTGGCCCTCGTCAAGGACTACAGATCCAAGGTCGAGACGGAGCTGTCGCAGGTCTGCGCCAGCATCCTCAACCTCCTGGACTCCAACCTCATCCCCTCTGCCTCCGCCAGCGAGTCCAAGGTCTTCTATTTGAAGATGAAGGGCGATTATCATCGCTATCTCGCAGAGTTTAAGGTTGGGGATCAGAGAAAAACCGCTGCTGAGGATACCATGTTGTCTTACAAGGCTGCGCAGGACATTGCTTATGCGGATCTTCCCCCTACGCACCCCATACGGTTGGGTCTCGCACTTAATTTCTCTGTCTTCTACTATGAAATCCTCAACCAGTCTGATAAAGCTTGTGGGATGGCTAAACAGGCTTTTGAGGAAGCAATTGCTGAGCTGGACACCTTGGGAGAAGAATCCTACAAAGACAGCACGCTCATAATGCAACTTCTAAGAGACAACCTCACCCTTTGGACTTCTGATGTCCAGGACCAGCTTGATGAGCCCTGA 747 0.5502 MVEKLGREQYVYLAKLSEQAERYEEMVEFMQKVVVGWTPASELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVALVKDYRSKVETELSQVCASILNLLDSNLIPSASASESKVFYLKMKGDYHRYLAEFKVGDQRKTAAEDTMLSYKAAQDIAYADLPPTHPIRLGLALNFSVFYYEILNQSDKACGMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDQLDEP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3188 248 PANTHER BNAC02G00320D PROTEIN 3 244 - -
Ssu1g3188 248 SUPERFAMILY 14-3-3 protein 6 240 IPR036815 -
Ssu1g3188 248 Coils Coil 13 33 - -
Ssu1g3188 248 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Ssu1g3188 248 PANTHER 14-3-3 PROTEIN 3 244 IPR000308 -
Ssu1g3188 248 PIRSF 14-3-3 1 247 IPR000308 -
Ssu1g3188 248 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Ssu1g3188 248 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Ssu1g3188 248 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Ssu1g3188 248 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Ssu1g3188 248 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Ssu1g3188 248 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Ssu1g3188 248 Pfam 14-3-3 protein 13 238 IPR023410 -
Ssu1g3188 248 SMART 1433_4 7 247 IPR023410 -
Ssu1g3188 248 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Ssu1g3188 248 Gene3D - 1 247 IPR036815 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3188 Ssu-Chr1 83186086 83188108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3188 1 242 14-3-3 family AT5G10450 85.950 2.19e-157 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3188 K06630 - gmx:100818967 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3188 1 83186086 83188108 Ssu1g3188 1 83186086 83188108 ECH