Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3186 ATGGCACCCAGTTTTGACTGCGTTTCGAGCCTCCTTTGCACGGAGGAAGACAGCAGCGTTTTCGACGAGAGCCATAATGGGGGTACGATGAGGGTGTACGAGGACACGTGGAGTCCTAAGAGCCACCACTTTGATGACCCAGATGAGTTGCCATTGCTGAGTGATGAGTGTTTGGCGTTGATGGTGGAAAAGGAATGCCAAATCTGGCCCGGTGTACGTTACTTGAATAGGCTTCAGACTGGGGATTTGGACGTTGGTGCCAGAATGGAGGCCATTGATTGGATTCAAAAGGTCCGATCGTATTTCGGCTTTGGTCCTCTCTGTGGATATCTATCTGTGAATTACTTGGACCGATTCCTTTTTGCATATGAATTACCAAAAGGAAGAGCTTGGACAATGCAATTGTTGGCTGTGGCGTGTTTATCTCTGGCAGCCAAATTAGAGGAGACAGAAGTTCCACTGTCTCTGGATTTGCAGGTGGGTGATTCCAAGTTTATATTTGAGGCTAAAACCATTAAGAGAATGGAGCTTCTAGTACTGAGCACATTGAAGTGGAGAATGCAAGCAATTACTCCTTTCACCTTCCTTGATTACTTCCTTTGCAAGATCAATGGTGATCAAAGTCCATTAAGGTCTTCAATTATGCGATCCATCCAACTTATATCAAGCACTGCAAGAGTGATTGACTTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCAGTGGCTATGTATGTCATGGGGGAAACCCAAACAGTTGACACTGGGAAAGCAATTTCTGTTCTGATTCAGCATGTAGAAAAGGAGAGACTATTGAAGTGTGTTAAAATGATCCACGAGTTGTCATCCAACAGTGCCTCTGTCAAGGATTCAAGTGCTTCTGTCACTTGTCTACCCCAAAGCCCAATAGGTGTGTTAGAAGCTTTGTGCTTCAGCTACAAAAGTGATGACACTAATGCTGGTTCATGCACAAACTCATCACATAATAGCCCCGTTGCTAAGAGAAGGAAGTTAAACAAAACCTGTGGAGCAGAGCTAATGTAG 1044 0.4464 MAPSFDCVSSLLCTEEDSSVFDESHNGGTMRVYEDTWSPKSHHFDDPDELPLLSDECLALMVEKECQIWPGVRYLNRLQTGDLDVGARMEAIDWIQKVRSYFGFGPLCGYLSVNYLDRFLFAYELPKGRAWTMQLLAVACLSLAAKLEETEVPLSLDLQVGDSKFIFEAKTIKRMELLVLSTLKWRMQAITPFTFLDYFLCKINGDQSPLRSSIMRSIQLISSTARVIDFLEFKPSEIAAAVAMYVMGETQTVDTGKAISVLIQHVEKERLLKCVKMIHELSSNSASVKDSSASVTCLPQSPIGVLEALCFSYKSDDTNAGSCTNSSHNSPVAKRRKLNKTCGAELM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3186 347 SMART cyclin_7 93 181 IPR013763 -
Ssu1g3186 347 CDD CYCLIN 88 180 IPR013763 -
Ssu1g3186 347 Pfam Cyclin, C-terminal domain 190 289 IPR004367 -
Ssu1g3186 347 SUPERFAMILY Cyclin-like 173 283 IPR036915 -
Ssu1g3186 347 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 340 - -
Ssu1g3186 347 Pfam Cyclin, N-terminal domain 58 187 IPR006671 -
Ssu1g3186 347 SMART Cyclin_C_2 190 301 IPR004367 -
Ssu1g3186 347 Gene3D - 71 188 - -
Ssu1g3186 347 PANTHER CYCLINS 1 340 IPR039361 -
Ssu1g3186 347 Gene3D - 60 277 - -
Ssu1g3186 347 SUPERFAMILY Cyclin-like 45 187 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3186 Ssu-Chr1 83157352 83159265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3186 61 324 Core Cell Cycle Gene Families AT2G22490 50.368 1.76e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3186 K18810 - gmx:547739 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3186 1 83157352 83159265 Ssu1g3186 1 83157352 83159265 ECH