Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3185 ATGGGAGAAGATTGTGGAACCTGGGTACCGCATCTGCAATTTGGATGGCAATCACCAAATTTGAATCCCCTTGATATGGGGAAGCCAGATGGTGTTTCTGCAGCTATGAACCCTGGCGTTAATATGGTCTCTAGCAATGAGACAATGCCAGCTTTTGCATCCTCTGCGTTACCTCATTTGCAGTTAGGACATTCCAATGAACCCGGTGGTTGGTTGTATTGTTTGCCTCGCTTCCGACAGGGATTTACTCCTGCTTCTAACTTCACTGCTGAGGGAAAACCCCCTGCTGACCATGTGAAAGGTTTTGGGGACAAAATTGCTCCCTGTGGTGAATCTAGCTCCCCTCAGAAACAATTTCTTGTTATTGACCAGACGGGTGGTCAAACAACTATTGTTTATAGCTCTAGGTTTGGGAGTCCCGGTGAGTGCCGTACTTCTTGGCATTCAAGACTGCATGGTGCTGACTATTTGAGGGGGAATGAACCTTCTTTCAGAagagatttgaatttgaatttgaatcataTGACTGAGCCAACTTTGGCTGGTAAAGTCGATGAGAATCCGGCAACCAGCATTGAAAGTGAGATGCATGAAGACACAGAAGAAATTAATGCATTGCTTTACTCGGACAGTGAGGGCTATTGTACCCAGGATGATGATGAAGTTACTAGCACAGGGCACTCTCCGAGTACAATGACCACTCATGACAACCGTGAAACCTTTAGGGGAGCCACAGAAGAAGTTGCAAGCTCTGCCGGGAAAACCAACAAGAGGAAGCTATTGGATGGTTATTATGATGACATACAACTCATGGATACTGCCAGTTCTCAGAATCTGAACAAATCTTCTGCCACGGGAGATGATGCAGAATCAAGATGTTCTAGTAACAACAATGAAGGATCCTTGTCTGGCACtaagaagatgaaaaaggaGAAGATACGAGATGTTCTGAGCATGCTGCAGAGCGTAATTCCTGGCGGGAAGGATAAGGACCCGGTCATACTTCTCGACGATGCCATACGTTGCTTGAAATCCTTGAAACACAAGGCTCAAGCACTTGGACTTGATGCCTTAATAAACAAGTTAATGGTTGTTAAGGAGCTTGTGCTCAGCAACGAAGATGAAGAAATTTTCACTGGCTGTGAGAGATTGAGCGCATTGGAAGCCTACCATTGCTTGGAGCAACATGTGctaaaacaagAAGAATATTCTGGAAAAAGTTCTAGAGTGGGTCTTCGTGGATGGGCAGGCATATATTCCTCAAACGGACAGTCTGATACGAAATCGGAGGTGTACTTGATGTGGTCTATAAGTCATGAAGGATCATGGTGTCATGGCCTTAGTGGGTTGTCTGGTGGTGCTACACTGTTAGTAGCCCATGTCCTCAAGAGTCGAGAGATGTCGTCCAAGGATCGGAGGGATGGTAAGCGGCTTGATCAACCGTGGTCAGGTCTCGATGTTGGGCTTGGGCCTCGTAATAGTTTAGAGTActcagcaattttttttatgggcTCTGTTATTCTCATTCCCTTTTTGTCTATTCTCACACCtccgttttttttttgtaattaa 1572 0.4332 MGEDCGTWVPHLQFGWQSPNLNPLDMGKPDGVSAAMNPGVNMVSSNETMPAFASSALPHLQLGHSNEPGGWLYCLPRFRQGFTPASNFTAEGKPPADHVKGFGDKIAPCGESSSPQKQFLVIDQTGGQTTIVYSSRFGSPGECRTSWHSRLHGADYLRGNEPSFRRDLNLNLNHMTEPTLAGKVDENPATSIESEMHEDTEEINALLYSDSEGYCTQDDDEVTSTGHSPSTMTTHDNRETFRGATEEVASSAGKTNKRKLLDGYYDDIQLMDTASSQNLNKSSATGDDAESRCSSNNNEGSLSGTKKMKKEKIRDVLSMLQSVIPGGKDKDPVILLDDAIRCLKSLKHKAQALGLDALINKLMVVKELVLSNEDEEIFTGCERLSALEAYHCLEQHVLKQEEYSGKSSRVGLRGWAGIYSSNGQSDTKSEVYLMWSISHEGSWCHGLSGLSGGATLLVAHVLKSREMSSKDRRDGKRLDQPWSGLDVGLGPRNSLEYSAIFFMGSVILIPFLSILTPPFFFCN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3185 523 MobiDBLite consensus disorder prediction 276 303 - -
Ssu1g3185 523 PANTHER TRANSCRIPTION FACTOR BHLH145 1 356 - -
Ssu1g3185 523 PANTHER TRANSCRIPTION FACTOR BHLH145 1 356 IPR037546 -
Ssu1g3185 523 MobiDBLite consensus disorder prediction 218 238 - -
Ssu1g3185 523 MobiDBLite consensus disorder prediction 214 239 - -
Ssu1g3185 523 MobiDBLite consensus disorder prediction 276 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3185 Ssu-Chr1 83088882 83093802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3185 70 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50010 31.271 1.41e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3185 - - gmx:102668102 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3185 1 83088882 83093802 Ssu1g3185 1 83088882 83093802 ECH
Ssu6g2482 6 58558567 58559697 Ssu1g3185 1 83088882 83093802 PCT