Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3183 atgaaaacgaaaagaaaaagcacaattaaaaagaaaaagaaaaagaaaattgcgTCGATGGCATTCACATCACATCGTCCTCCAAAGCTGCGAATCACTTACGACTTTAAAGTTGAATACCCCTTTCTTCGCAGTTATGGGTTTTGGCGCCCCATGTGCTTCCCTTTCCCACCGCCACGCCACGTCTCTCTCGCTTTCTCTTCCCATTCCTCCAAATCTCTCCCAATTCTCATGGGCTACCTCTCCTGCAATGCCGAGTCCGCAATCGCCACCTGCGACCCCCACTTGAAGAAGCACAAACCCCGCGCCGCAACCCCAATCCGCCACTTCCGCTACCCCGACCTCCTCGCCGCCGCCAACGGCTTCTCCGCCGACAGCTTCCTCGGCCGAGGCAGCCACGGCAGGGTGTACCGAGCCGCCCTCGACGGCGGCAAGCTCCTCGCCGCCGTCAAAACCACAAAAGTGGCCAGCGCCAGGTGCACCGGCTGCGGCAACTGCACCAGCCCCGCGGAAAACGAGATCGAGATCCTCTCCCAGGTCCCGAGCCCCCGCGTGGTGAACCTGATCGGCTTCAGCACCGACCCAAACGGCAACAAACTAATCGTCGTGGAGTACATGCCCAACGGCTCGCTCCACGATCTCCTGCACAGGGCGAAAAAGCCGCCCGGTTGGACCCGTCGGGTCCGGTTCGCGCTTCAGGTGGCGAAAGCGGTTCGCGAATTGCACTCCTCCGACCCTCCCGTTATTCACCGCGACGTTAAGTCGTCCAACGTTTTGATCGACGAGCGCTGGAACGCGAGGCTCGGTGACTTCGGCCTCGCGTTGAGGGGACACGTGGAGGACGTTCGCGTCAAGTGCACGCCGCCCGCGGGGACGTTAGGGTACCTCGACCCGTGCTATCTTGCGCCGGAGGATCTCAGCGCCAAGAGCGACGTCTTCAGCTTCGGGATCTTGCTCTTGGAGATTGTCAGCGGGAGGAACGCCATCGATGTTAACTACAGTCCTCCCTCGGTCGTGGACTGGGCGGCGCCGTTGATTAGGCTCGGCGACTTCGCCGGAATCTGCGACCGTCGGATCGGACCGCCGCCGGATACCGCCGCCGTGCGGCAGCTAGCGGTGCTGGCCGCGCGGTGCGTGAGGTCGACGGCGGAGAAGCGGCCGTCCATGGCGGAGGTGGTGGAGTGTCTCAATCTCGCGCGGAAGAGGATTCGCTCGTCGGCGGTGTGGTGCAGTCTGCGGCGGCGCGTGGCGCGTGTGGTGAGCGCGCGGCCGGGGGTGGCGTGGGAGGAGTGTGATGATAATGATAGGAGTGAGGAGGTTGTGAGAATGGTGAAAGGTGGGAGCAGGAGGAACGGGAAAGTATCCAGTGTGTCGGGTGTAGGGTATGGGAGTGAGCCCgcgaataataataatgataataaagtgATGAGGTCAAAGTCCATTGGTTCTGGTTCGTTGAGAGGGAGTTGGATTAAAATGCAGCCGAACCAAAGCGAGCATGGGTTTGGGAGAAGGAAAATAAGGCTGAAAAAGTCCAAGTCTATGGGGGTTTTGCAGGGTTCTCTCCTGTTACATTATGACGGCgagaataacaataacaataataataataataatgatgatctAATTCGTTCGGCCATGTCCAAGTTGGTTGTTACGGATAAGTTGGAAAAGAAAATGCTAGAAAAACCGTTAGTGAACTTTTGA 1707 0.5571 MKTKRKSTIKKKKKKKIASMAFTSHRPPKLRITYDFKVEYPFLRSYGFWRPMCFPFPPPRHVSLAFSSHSSKSLPILMGYLSCNAESAIATCDPHLKKHKPRAATPIRHFRYPDLLAAANGFSADSFLGRGSHGRVYRAALDGGKLLAAVKTTKVASARCTGCGNCTSPAENEIEILSQVPSPRVVNLIGFSTDPNGNKLIVVEYMPNGSLHDLLHRAKKPPGWTRRVRFALQVAKAVRELHSSDPPVIHRDVKSSNVLIDERWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIVSGRNAIDVNYSPPSVVDWAAPLIRLGDFAGICDRRIGPPPDTAAVRQLAVLAARCVRSTAEKRPSMAEVVECLNLARKRIRSSAVWCSLRRRVARVVSARPGVAWEECDDNDRSEEVVRMVKGGSRRNGKVSSVSGVGYGSEPANNNNDNKVMRSKSIGSGSLRGSWIKMQPNQSEHGFGRRKIRLKKSKSMGVLQGSLLLHYDGENNNNNNNNNNDDLIRSAMSKLVVTDKLEKKMLEKPLVNF 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3183 568 PANTHER - 77 555 - -
Ssu1g3183 568 Gene3D Transferase(Phosphotransferase) domain 1 206 411 - -
Ssu1g3183 568 Gene3D Phosphorylase Kinase; domain 1 85 205 - -
Ssu1g3183 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Ssu1g3183 568 SMART serkin_6 122 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3183 568 MobiDBLite consensus disorder prediction 451 476 - -
Ssu1g3183 568 ProSiteProfiles Protein kinase domain profile. 122 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3183 568 MobiDBLite consensus disorder prediction 447 476 - -
Ssu1g3183 568 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Ssu1g3183 568 Pfam Protein tyrosine and serine/threonine kinase 126 396 IPR001245 GO:0004672|GO:0006468
Ssu1g3183 568 PANTHER OS01G0750732 PROTEIN 77 555 - -
Ssu1g3183 568 SUPERFAMILY Protein kinase-like (PK-like) 107 412 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3183 Ssu-Chr1 83048193 83049899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3183 108 403 Receptor kinase-like Gene Family AT3G59420 40.864 2.09e-63 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Ssu1g3183 PK_Tyr_Ser-Thr 3.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3183 - - gmx:100799382 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3183 1 83048193 83049899 Ssu1g3183 1 83048193 83049899 ECH
Ssu6g2479 6 58456434 58457891 Ssu1g3183 1 83048193 83049899 PCT