Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3181 ATGGAATTTGACGAGCACGAGGAccaagaggaggaggaggaggaagaagggGAGGAGGAAATGGGATTCTCAGCGGCGGCGGCGGGTTACGACTCGGTGGGAAACGCGGCGGCGAGGTCCAAAATGAGCGCCGCAGAGGGAATTCCAGCCACGGGCAATTCCGGTCGCAAAGGCGGGTCCGCGGGGACGGTCAGATACAGAGAATGTCAGAAGAACCACGCCGTGAGCATCGGCGGCCACGCCGTCGACGGCTGCTGCGAGTTCTTGGCCGCCGGAGAGGAAGGCACGCTGGAGGCCGTAATTTGCGCCGCCTGTAACTGCCACCGCAATTTCCACCGCAAGGAGATCGACGGCGAAATCAGCCCTTATCAACCGCGGTCGCAGCCGCAGCCGCAGCCGCTGCACCCTCAGTACCACCACCAATTCTCCCCTTACTACCACCGCGCGCCACCGCCTTCTGCCGGatacctccaccaccacctggTTACTCCTCCGGTGTCCCAGCATCGGCCGTTAGCTCTGCCACCACTGGCTTCGGGAGGAGTGTTCAGTAGGGAGGAGGAAGACATGTCAAACCCCAGCTCcagcggcggcggcggcggtggTAGCGGCAGCGGAACGAAGAAGAGGTTTAGGTCGAAGTTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTTGCCGAGAAGCTAGGGTGGAGAATCCAGAAGCATGACGAAGCTGCTGTGGAGCAATTCTGCGCGGAAATTTGTGTCAAGAGACATGTGCTCAAGGTTTGGATGCACAATAACAAACACACTCTTGCGAATTCTGCGCAACGTTCAGCTGGGAATGGATCGAACCACATGAATAGCTCCACTATAATTGCGAATTCTCAATTCTCCTAA 885 0.5311 MEFDEHEDQEEEEEEEGEEEMGFSAAAAGYDSVGNAAARSKMSAAEGIPATGNSGRKGGSAGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEISPYQPRSQPQPQPLHPQYHHQFSPYYHRAPPPSAGYLHHHLVTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGGSGSGTKKRFRSKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAEICVKRHVLKVWMHNNKHTLANSAQRSAGNGSNHMNSSTIIANSQFS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3181 294 MobiDBLite consensus disorder prediction 1 62 - -
Ssu1g3181 294 MobiDBLite consensus disorder prediction 167 210 - -
Ssu1g3181 294 MobiDBLite consensus disorder prediction 272 294 - -
Ssu1g3181 294 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 115 IPR006456 -
Ssu1g3181 294 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 268 - -
Ssu1g3181 294 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 208 264 IPR006455 -
Ssu1g3181 294 MobiDBLite consensus disorder prediction 188 202 - -
Ssu1g3181 294 Gene3D - 193 271 - -
Ssu1g3181 294 SUPERFAMILY Homeodomain-like 194 266 IPR009057 -
Ssu1g3181 294 MobiDBLite consensus disorder prediction 1 21 - -
Ssu1g3181 294 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 268 - -
Ssu1g3181 294 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 65 116 IPR006456 -
Ssu1g3181 294 Pfam ZF-HD protein dimerisation region 64 116 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3181 Ssu-Chr1 83014570 83015756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3181 13 267 ZF-HD Transcription Factor Family AT4G24660 48.846 2.56e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu1g3181 ZF-HD_dimer 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3181 - - gmx:100794438 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3181 1 83014570 83015756 Ssu1g3181 1 83014570 83015756 ECH
Ssu6g2478 6 58414654 58416113 Ssu1g3181 1 83014570 83015756 PCT