Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3175 atgacGAGGGCGAAGATCAAGATAAAGAAGATCGACAACATAACGGCGAGGCAGGTAACATTCTCTAAGAGGAGGCGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCGGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGCTCCAGTATGAATGACATAATTACAAGGCATAACACACACTCCCATGGCATCAACAAATTGGACAGGCCTTCACTAGAACTGCAGCTAGAGGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGCAGATAGAACCCAAGAACTAAGGTGGATGAAAGGCGACGATCTTCAAGGACTAGACCTAAATGAGTTGCAGCAGCTGGAGAAAACCCTTGAAACAGGACTCGACCGCGTGATTGAGATAAAGGAAAAGCGGATGATGAGTCAGATTTCTGAACTTCAGAAAAAGGGAATCCTGTTGGAAGAAGAGAACAAGCATTTAAAGCAAAAGctAGCGAAGACGGAGATGGAGGTTATGCTGCGTAAAGCAAAAATTCCTTTCCTGGTGGACTCGGATATGGGAATGCAGGAAGAAGGCGTTTCATTAGAGTCTACAAATAACATTAGCAGTTGCATCAGTGACCCTCCTATCGAGGATGGTTCCTCGGACACATCTCTTAAGCTAGGGCTACCCTTCTCTAACTGA 702 0.4459 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSSSSMNDIITRHNTHSHGINKLDRPSLELQLEASNSAKLSKEIADRTQELRWMKGDDLQGLDLNELQQLEKTLETGLDRVIEIKEKRMMSQISELQKKGILLEEENKHLKQKLAKTEMEVMLRKAKIPFLVDSDMGMQEEGVSLESTNNISSCISDPPIEDGSSDTSLKLGLPFSN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3175 233 Coils Coil 149 176 - -
Ssu1g3175 233 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 227 - -
Ssu1g3175 233 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g3175 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu1g3175 233 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g3175 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 227 - -
Ssu1g3175 233 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Ssu1g3175 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu1g3175 233 CDD MADS_MEF2_like 12 75 IPR033896 GO:0000977|GO:0045944
Ssu1g3175 233 Coils Coil 123 143 - -
Ssu1g3175 233 MobiDBLite consensus disorder prediction 210 233 - -
Ssu1g3175 233 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Ssu1g3175 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu1g3175 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu1g3175 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu1g3175 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu1g3175 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3175 Ssu-Chr1 82905588 82913448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3175 1 231 MADS-box Gene Family AT2G22540 57.741 5.38e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu1g3175 K-box 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3175 - - gmx:100776749 395.586