Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3174 atgaACACAGGCAGAGCCGAAGCGGAACGCTTGCTCGCGATCGGCGAGAAGCTGCTGCAGAGCCGCGATCTGAACGGCTCGCGGGACTTCGCCATTCTCGCCCAGGAAGCCGAGCCGCTCCTCGAGGGCTCCGACCAGATCCTCGCCATCGTCGACGTGCTCCTCGCGGCGGAGAAGCCCGCCAACAACGACCACGTCGATTGGTACGCTATCCTCCAAGTGGATCGCACGTGCCAGGACCAGGATCTCATAAGGAAGAACTACCGTAGGCTCGGCCTCCTCCTTCACCCCGACAAGAACCCTTTCTCCCTCGCTGACCACGCGTTCAAGCTCGTCGCCGATGCCTGGGCCGTGTTGTCCGACCCGGTCCAGAAGCCCATCTACGACAGGGACATCGCCGGTTCGGCCGAACCGGCGAGCTTCTGGACCGCGTGTCCGTACTGTTACTTTCTCTACGAGTACCCTGCGGGTTGCGAGGGATGTTGTCTAAGGTGTCAGAATTGCGAGAGGTCGTTCCATGGGCTCTCGATTCCGTCTCTCCCGCCGCTCGTGCCGGGTCAGGAGGCCTATTATTGTAACTGGGGATGCTTTCCCATGGGCTTTGTGTTTGGAAAATTGGGTTCCGATGGGCCTGGGCCTGGCCCCATGGAGAATGGTCCAAATATTATTGAACCGGTGGCGGTGGAGAATGGGGTTGCTTCGCGGAAGCGAGTTTGTGCTTGTTTTATTGACGTTGAACAAGCTCGGGACAAGTTTTGCTTAAGTTTATGTGAATCTCAAGGCACATACAATAAAGGTGAGCTGGTGGGTAGGTTAGCTGATCTGGTTCAGGATTTGATCAGGGATAGATTGAGCCAGCAGATTTCTCTTCATCTTgcttttattttggtcaaaacTTCATCTTGCTTTGATGGTGAAGTAGTCTCTCCAGAGCCAAACTTATTGGATGTCATCAACGTTTTGGATGCTGTTCCTTTTCCTGCAATTACTGCTCTTTCTTTTGTGGCCTTTAGGGATTTAGAGGCCTTCTATCCATATTCTGGGTTTGGGCTTGAGATATTGATGTGGGGCTCGATGTCACAGCAAATTTGTCAAGTTCTACTTTGA 1107 0.5285 MNTGRAEAERLLAIGEKLLQSRDLNGSRDFAILAQEAEPLLEGSDQILAIVDVLLAAEKPANNDHVDWYAILQVDRTCQDQDLIRKNYRRLGLLLHPDKNPFSLADHAFKLVADAWAVLSDPVQKPIYDRDIAGSAEPASFWTACPYCYFLYEYPAGCEGCCLRCQNCERSFHGLSIPSLPPLVPGQEAYYCNWGCFPMGFVFGKLGSDGPGPGPMENGPNIIEPVAVENGVASRKRVCACFIDVEQARDKFCLSLCESQGTYNKGELVGRLADLVQDLIRDRLSQQISLHLAFILVKTSSCFDGEVVSPEPNLLDVINVLDAVPFPAITALSFVAFRDLEAFYPYSGFGLEILMWGSMSQQICQVLL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3174 368 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 237 - -
Ssu1g3174 368 SUPERFAMILY Chaperone J-domain 62 131 IPR036869 -
Ssu1g3174 368 CDD DnaJ 67 121 IPR001623 -
Ssu1g3174 368 Gene3D DnaJ domain 55 141 IPR036869 -
Ssu1g3174 368 SMART dnaj_3 66 124 IPR001623 -
Ssu1g3174 368 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Ssu1g3174 368 PRINTS DnaJ domain signature 69 87 IPR001623 -
Ssu1g3174 368 PRINTS DnaJ domain signature 104 124 IPR001623 -
Ssu1g3174 368 PRINTS DnaJ domain signature 88 103 IPR001623 -
Ssu1g3174 368 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 1 237 - -
Ssu1g3174 368 Pfam DnaJ domain 67 129 IPR001623 -
Ssu1g3174 368 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3174 Ssu-Chr1 82884420 82887489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3174 2 234 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 52.918 2.82e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3174 - - gmx:100802055 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2502 6 58975627 58976664 Ssu1g3174 1 82884420 82887489 PCT