Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3172 ATGTTGTGCTCATCGCATGACCTTGGACTTCACTTCAATTCAATTAGATTGTCTCGCGACGTTAGGCTATACAGTAATAATGGAAGCTGTAGTTTCTGTCTTAAGCCCGTGCGTGGTGGTCGATTATGTTTTGTTGCCATCAGTCTTATGCCACATGGTTTGATGCAGGATTCTTCAGCACTGTTTTCCAGATTACATGCTCCACTTAGGCCTGTACCTTCGAGATGTAATGCTTTGTCGTGCCGGTGTTCCCTTATGCCAGCTGGAGGGTGTGAGGCCCCACTTGTGACAGTGGCTGCTGTTTCTTTGTCAAGGTCATATAATGCTTTAGCAGGAAAACCAAGTGTAATTCAATTGATCCCTGCCCTAGGTATCATTGGCTTTGCTGTTTTTGGTCTTGAGCCGCTCCTGTGCCTTAGCAGGAATCTGTTTCTCCAAGAAAGGACTGATAAAAGTTGGAAGAAAAGTGGTTCACGTTATATTTTGACATCTTATTTGCAACCTTTGCTGCTGTGGACTGGGGTAATGCTCATCTGCAGGGATTTAGATCCACTAGTCCTACCATCAGAAACCAATCAGGCTATGAAGCAGCGGCTGCTGAGTTTTGTAAGATCTTTGTCAACGGTGCTTACATTTGCTTACTGTTCTTCAAGCTTAATTCGACAAGCGCAAAAATTTTGTATGGAGACAAATGACTCCAGTGATGAAAGAAATATGAGCATTGATTTTACTGGGAAAGCTGTATATACTGCAATATGGGTTGCTGCTGTGTCATTATTCATGGAATTGCTGGGTTTCTCCACACAGAAGTGGTTGACTGCTGGTGGTTTGGGCACAGTATTGCTGTCCCTTGCAGGTCGTGAGATATTTACGAACTTCCTTTCAAGTGTAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCggattcaaacaaaaatcaaaggaTATGAAGTTACTGGTAAAGTTGAGCATGTAGGCTGGTGGTCACCAACAATAGTTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACTCACCTTTCTATCAGTCACTTGGATGTTAACAAGATTAATAGTATTATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAGAGAAAATTGCACAGACGGGTTTTTCTAGAGAATATTGATCCAGAAAATCAGGCTCTTATGATATTAGTATCTTGCTTTGTTAAAACTTCACATTCTGAAGAGTACCTCCGCGTAAAGGAGGCAATCCTCTTGGATCTTCTCAGAGTTATCAGTCATCATCGAGCTCGGCTAGCCACACCCATCCGCACAGTTCAGAAGATGTGCAGTGATACTGATTTAGATATTGATCCATTTAATGACACCATTTCCACTCGTTTCAGATCAAAGAAAAACCGTCCTTTACCTCTGATAGATCCACCTTATAAAGTTCAGCCTTCAACTATTACAAACGAGGACAAAGATGCCAAGATTGATGAAACCTTGGCATCTGACTTCAAAGTAGAACGTGAAAAATTTGCTGCAACATCAAGCCCCACCTTAATATCTCAAGCCAAAATCCAGAatatgaattttgatatttcaGTCCAGAAGACCTCCAAATCCCAAAAGCCCAGAAAGGAAAGAGCAGGAAGCGCAGGAAAGGGAACAACATCCAAAATTTTGTTGACACCCAATGAGTTTGGTCCTGGAGAGACCACTTCACCATCAAAGCAAGATGAAGAGAAATCTGTGGTGTCATCATCATCTGTTAGTTGTTCTTTGGAAGAGAATATTGTTCTTGATGCTGCCCTACTGGGCTCAAAGAGAACACTTGCAATTGATGAAGAAATGATTCAATCTATCCCGGCAGAATCACAAGAAGTTGCAGTCCATAAAAATGGGAGTGGACCTCCTATTTGCAAGGATAAGAAGGATGGTGAGATGTCTTCATTTCCTACTGCTAAACAGAAGGATTAG 2034 0.4105 MLCSSHDLGLHFNSIRLSRDVRLYSNNGSCSFCLKPVRGGRLCFVAISLMPHGLMQDSSALFSRLHAPLRPVPSRCNALSCRCSLMPAGGCEAPLVTVAAVSLSRSYNALAGKPSVIQLIPALGIIGFAVFGLEPLLCLSRNLFLQERTDKSWKKSGSRYILTSYLQPLLLWTGVMLICRDLDPLVLPSETNQAMKQRLLSFVRSLSTVLTFAYCSSSLIRQAQKFCMETNDSSDERNMSIDFTGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLSLAGREIFTNFLSSVMIHATRPFVVNERIQTKIKGYEVTGKVEHVGWWSPTIVRGSDCEAVHIPNHNLSVNVVRNLSKKSHWRIKTHLSISHLDVNKINSIIADMRKVLAKNPQVEQRKLHRRVFLENIDPENQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHRARLATPIRTVQKMCSDTDLDIDPFNDTISTRFRSKKNRPLPLIDPPYKVQPSTITNEDKDAKIDETLASDFKVEREKFAATSSPTLISQAKIQNMNFDISVQKTSKSQKPRKERAGSAGKGTTSKILLTPNEFGPGETTSPSKQDEEKSVVSSSSVSCSLEENIVLDAALLGSKRTLAIDEEMIQSIPAESQEVAVHKNGSGPPICKDKKDGEMSSFPTAKQKD 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3172 677 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 13 600 - -
Ssu1g3172 677 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 13 600 IPR045042 -
Ssu1g3172 677 MobiDBLite consensus disorder prediction 575 603 - -
Ssu1g3172 677 Gene3D - 190 303 - -
Ssu1g3172 677 MobiDBLite consensus disorder prediction 553 603 - -
Ssu1g3172 677 Pfam Mechanosensitive ion channel 246 453 IPR006685 GO:0016020|GO:0055085
Ssu1g3172 677 SUPERFAMILY Sm-like ribonucleoproteins 289 359 IPR010920 -
Ssu1g3172 677 MobiDBLite consensus disorder prediction 492 512 - -
Ssu1g3172 677 MobiDBLite consensus disorder prediction 643 677 - -
Ssu1g3172 677 MobiDBLite consensus disorder prediction 656 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3172 Ssu-Chr1 82865217 82871754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3172 17 635 Mechanosensitive Ion Channel Family AT1G58200 52.366 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3172 K22047 - gmx:100797302 1147.11