Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3171 ATGAAATCGGCTAGTGTTATTTTAACAAGGTCATATGATGCTTTACAAGGAAACCCTGTTTTGCTTCAATTGCTCCCGGCCCTTGGTATCATTACCTTTGCTGTTTGCGGTCTTGAGCCACTCCTTCGTCTCAGCAGGATTTTGTTCCTTCAAagAACTGACAGTAGTTGGAAGAAAAGTAGTTCGCGATATGTTATGACATCGTATTTTCAGCCATTGCTGTTGTGGACTGGAGCAATGCTCGTATGCAGGGCATTAGATCCACTAGTCCTACCATCTAAGACCAGCCAAGTTGTGAAGCAGCGGCTGCTGAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTCCTGTTTATCAAGCTTAATTCAACAAGCACAAAATTTCTTTCTGGAGGAAAATGACTCCAGTGGTGCAAGAAATGTGGGCCTTGATTTTGCTGGGAAGGCAGTATATACTGCTGTATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCTGGTGGTTTGGGTACAGTATTGCTCACTCTTGCAGGTCGTGAGATATTTACAAACTTTCTTTCAAGTATAATGATCCATGCAACTCGGCCATTTATTGTGAACGAGTGGATTCAAACGAAGATCGAAGGATATGAGGTTTCTGGTACAGTTGAGcatGTGGGCTGGTGGTCACCGACCATTGTTAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAATCACAAGTTCACTGTAAATGTTGTGAGAAATCTGAGCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGgatgttaacaaaattaatAATATTGTAGCTGATATGCGCAAGgttttgtctaaaaatcctCAAGTAGAGCAGCAAAAATTGCATAGAAGGGTCTTTTTGGAGAATATCAATCCTGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTCAGTCATCATCGAGCCCGGCTAGCTACTGCCATCCGCACAGTTCAGAAAATATACAGTGAGGCTGACTCAGAAAATATACCTTTTGGGGACACCATTTTCACTCGATCCAGAACAACAAATCGCCCATTCCTACTGATAGAACCACCATATAAAGTTAATGGTGAAGATAAAGTTAAGCCTTCAACACGTTCAACTCGTGCAAATGAGGAAAAAGATTCCAAGATTGATGAAACTATGGCATCTGACACCAAAGGAGACGATAATTTTGCAGCAACATCAACCTCCTCACCTGATGTAAAGGATAAACCCAAGTCAATTTCTGAAGCCCAAATTCAGAATATGAGTTCTGATAGTTCAGTTGCCAAAACCATACAGCCTAAAAAGGAAAATGCAGGAGATGCAGGAAAGGGAAGTACAGTTCCTGTATCTAAAAACCTTGCACAAAGTGCTGTGCCTGAAACTTCTGTTACTACCCATGAGACCATTTCTGCTACTTCTTCACTGTCAAAGCAAGATGAAGAGAAATCTTCTGTGTCTTCGTCATCAGTTAGGCCATCCTTGGAAGAGAACATTCTTCTTGGGGTTGCCCTAGAAGGCTCAAAACGAACTCTTCCAATTGAAGAAGAAATGTCTCCATCTCCTATGCCTGCAGAGTCACAAGAATTAGCTGTCCAACGGAATGGGAGTGGACCTCCTGCTAGCAGGGATAAGAAGGATAGCCAGATGTCTTCATTTCCAACTGGCAAGCAGAATGACTAG 1818 0.412 MKSASVILTRSYDALQGNPVLLQLLPALGIITFAVCGLEPLLRLSRILFLQRTDSSWKKSSSRYVMTSYFQPLLLWTGAMLVCRALDPLVLPSKTSQVVKQRLLNFVRSLSTVISFASCLSSLIQQAQNFFLEENDSSGARNVGLDFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLSQKSHWRIKSYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLENINPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATAIRTVQKIYSEADSENIPFGDTIFTRSRTTNRPFLLIEPPYKVNGEDKVKPSTRSTRANEEKDSKIDETMASDTKGDDNFAATSTSSPDVKDKPKSISEAQIQNMSSDSSVAKTIQPKKENAGDAGKGSTVPVSKNLAQSAVPETSVTTHETISATSSLSKQDEEKSSVSSSSVRPSLEENILLGVALEGSKRTLPIEEEMSPSPMPAESQELAVQRNGSGPPASRDKKDSQMSSFPTGKQND 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3171 605 Gene3D - 101 207 - -
Ssu1g3171 605 SUPERFAMILY Sm-like ribonucleoproteins 193 263 IPR010920 -
Ssu1g3171 605 MobiDBLite consensus disorder prediction 405 605 - -
Ssu1g3171 605 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 597 IPR045042 -
Ssu1g3171 605 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 597 - -
Ssu1g3171 605 MobiDBLite consensus disorder prediction 438 478 - -
Ssu1g3171 605 MobiDBLite consensus disorder prediction 494 540 - -
Ssu1g3171 605 MobiDBLite consensus disorder prediction 587 605 - -
Ssu1g3171 605 MobiDBLite consensus disorder prediction 405 436 - -
Ssu1g3171 605 Gene3D - 209 264 IPR023408 -
Ssu1g3171 605 Pfam Mechanosensitive ion channel 150 357 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3171 Ssu-Chr1 82839726 82844213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3171 1 594 Mechanosensitive Ion Channel Family AT5G10490 59.768 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3171 K22047 - gmx:100777815 1008.82