Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3167 ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACGTACAATGTGGATTCTGTACCACTATTTTAATGGTAAGTGTCCCATGCAGCAATTTGTCAATGGCGGTGACAGTAAGATGCGGGCACTGCACAAGCCTCCTTTCTGTTAATATGTTGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCATGAGCCAAAAGAAAGTAGTGCAGAAGAAGATGCTAACAAGACTTTTAACAGCCATAGTGCATCCATGATGACCTATTCTGATTGCGAGGAAGAGGATGTAATTCCAATGAGTAATGTTGTGAATAAACCCCCCGAGAAGAGACAGCGAACACCATCAGCTTATAACTGTTTCATCAAGGAAGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATtGGGCCAATTTCCCCCCAACTCAGTGCAAAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTGATGCCGAGGTCAATGAAGAAGGTCAAGGCTTCCGTGGAAGAAAGGTCCCGAGGAATTCCATCTTGGAAAGGACACAGTTTGAATAA 648 0.4336 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSNLSMAVTVRCGHCTSLLSVNMLKASFVPFHLLASLSHHEPKESSAEEDANKTFNSHSASMMTYSDCEEEDVIPMSNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEESCSQTDQLVDLDSQVDPPDAEVNEEGQGFRGRKVPRNSILERTQFE 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3167 215 Gene3D High mobility group box domain 110 173 IPR036910 -
Ssu1g3167 215 PANTHER PROTEIN YABBY 6-RELATED 1 180 IPR006780 GO:0007275
Ssu1g3167 215 SUPERFAMILY HMG-box 109 162 IPR036910 -
Ssu1g3167 215 PANTHER AXIAL REGULATOR YABBY 4 1 180 - -
Ssu1g3167 215 MobiDBLite consensus disorder prediction 180 215 - -
Ssu1g3167 215 MobiDBLite consensus disorder prediction 192 208 - -
Ssu1g3167 215 Pfam YABBY protein 11 163 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3167 Ssu-Chr1 82780760 82782688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3167 2 215 C2C2-YABBY Transcription Factor Family AT1G23420 57.709 2.74e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ssu1g3167 YABBY 4.7e-62 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3167 K25796 - gmx:100804172 399.823