Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3161 ATGCCGGAGAAGAAGAACAAGAAAGTCTCGTTCACCGAAGAAGATGCTGCCATACTCCTGCAaagGTACGACGCAACTACGGTGTTCACTTTACTTCAGGAACTGGCGCAAAACCCTCAGCCGAAGATTGATTGGAGTGAGTTGGTGAAGAAAAGCGCGACGGGGATTTCCAATGCCAGGGAATATCAAATGCTCTGGCGGCACTTGGCGTATCGCCATTCCTTGCCCGAAAACTTCGAAGATGGGGCTGAACCTTTGGTGGATGATGATAGTGACCTTGAGTGTGAGCTAGAAGCATTACCCCCTGTAAGCTTGGAATCTGCATCAGAGGCTGCTGCATGCGTGAAGGTAATGATTGCTTCTCGTACATTAAGTGAATCTGCCCCTAGTAGCTCAACCATCGAGGCTCCATTGACTATAAATGTTCCAGTTTGCCATTCATCTAGAACTCTTATTGAAAGTTCACAACCCTCTAATTTGATGCAAGGGACGAGCATTATTTTTCCAGTTACTGTTCAGAGGCAGACATTGCCAACTGTATCAACAGATGGTATAGAAACCAAGGGATTAGTTGGTGGTAACATGGcttccaaaagaaaaagaaagacatgGTCAGAGGAAGAGGACATGCAGCTAAGAGCTGCTGTTCTGAAATGGGGTGAAGGGAATTGGGCAACCATGGCAAAAGGAGACAACTTTCCTATTAAGAGAAGTCCTACACAGTTGGCTCAGAGGTGGAGTATTTTACGAAAGAAAGATGGCAGTGCCAATCCAGGAACCATCTCAACCAGCATACAGTACAGTACTGCTGAACAGATGGCTACTCGACACTCTTTATCTTTAGCCCTTGATATGCCATTCAAAAAGTTAACTGCTCCTGGAATGATTGATCCTATTAAGACATCCGCATCAGTTAAAAATCAAGTGCAGATTAGAAATACAACAGAGACGGTTGCCAGTAGTTTTGTACCACTTCAACAGCCAACTCAACAAGCTTTGTTGGGATCTTCTGATTCTCATGCAAAATCCAAATTAGCAGATGAAAAACCAGTCTTGAAGGGTAATCTAATTTCAGACCAGGTGGTAAAATCTACCACAGCTGCTTCTGGGACACAAATTGATTCCCTTTCAAATACTATATCACAAGTTAAAGTTGCTCAAGTAAAAAACGCTGTAGATACTAAGCCTGCAGTTAGCTCTTTGACAAAGCCATCCATTTCTACCAATTTGCCTTCTGACCCAAAGGTTCATTCAAATATAACTTATGTATCTCTTGAAATGTGCACTAGTTCGATAAAAGCTGCTTCACCTAAAATGGAAAATTCACTcactattttgtttatattgtcTCAGCAGAACAAACATGTTACCCTTTTGGCTGATAAAGTTCCATTGAAGCAGGATGTTAATCCCACAAAAGAGTTTAGAGTTTCTGATCCCAGCTCCACATCGAAAGAAAAGGTACAAGAAAATGAACCTCCTAAAGTTACGACTGGAAGCCAGGTTGATAGCAAACCAGAGAAGGGAAGATTAGATATAAGTCAAGAGAAGAGCATGCCTCTTGTTAAAATTAGTAGTAGTgaggaaatttcaaaagataaagcaAATCCAGCAGGTTGTGAAGAGCAAGGAAGTGTTAAGAAGGCTACTGAGAATAGCAACCTTGATAAGGGGAGTCAAAATTTAGATCAAGACAAGaagataaattcaattaatgaaaattcaaatccGCAGCCAAAGTCTGGAATTGCCTAG 1755 0.4 MPEKKNKKVSFTEEDAAILLQRYDATTVFTLLQELAQNPQPKIDWSELVKKSATGISNAREYQMLWRHLAYRHSLPENFEDGAEPLVDDDSDLECELEALPPVSLESASEAAACVKVMIASRTLSESAPSSSTIEAPLTINVPVCHSSRTLIESSQPSNLMQGTSIIFPVTVQRQTLPTVSTDGIETKGLVGGNMASKRKRKTWSEEEDMQLRAAVLKWGEGNWATMAKGDNFPIKRSPTQLAQRWSILRKKDGSANPGTISTSIQYSTAEQMATRHSLSLALDMPFKKLTAPGMIDPIKTSASVKNQVQIRNTTETVASSFVPLQQPTQQALLGSSDSHAKSKLADEKPVLKGNLISDQVVKSTTAASGTQIDSLSNTISQVKVAQVKNAVDTKPAVSSLTKPSISTNLPSDPKVHSNITYVSLEMCTSSIKAASPKMENSLTILFILSQQNKHVTLLADKVPLKQDVNPTKEFRVSDPSSTSKEKVQENEPPKVTTGSQVDSKPEKGRLDISQEKSMPLVKISSSEEISKDKANPAGCEEQGSVKKATENSNLDKGSQNLDQDKKINSINENSNPQPKSGIA 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3161 584 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 254 IPR017930 -
Ssu1g3161 584 MobiDBLite consensus disorder prediction 470 492 - -
Ssu1g3161 584 Gene3D - 194 255 - -
Ssu1g3161 584 MobiDBLite consensus disorder prediction 546 584 - -
Ssu1g3161 584 CDD SANT_TRF 202 251 - -
Ssu1g3161 584 ProSiteProfiles Myb-like domain profile. 196 250 IPR001005 -
Ssu1g3161 584 SMART sant 200 252 IPR001005 -
Ssu1g3161 584 Pfam Myb-like DNA-binding domain 201 246 IPR001005 -
Ssu1g3161 584 SUPERFAMILY Homeodomain-like 199 252 IPR009057 -
Ssu1g3161 584 MobiDBLite consensus disorder prediction 470 584 - -
Ssu1g3161 584 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 579 - -
Ssu1g3161 584 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3161 Ssu-Chr1 82706259 82720618 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g3161 Myb_DNA-binding 9.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3161 - - gsj:114409223 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2507 6 59062603 59067756 Ssu1g3161 1 82706259 82720618 PCT