Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3155 ATGCCTCACAGAACCACGTACTTTTTCCCGCGTCAGTTCCCGGAGCGAGGGTTGGATGAATCTTCGAAACAGCTATTAGATCACGAGAAAAAGAAGATCTTCAACTCAATCAAACATGACACGTTTGGCGCCGAAAGCGACCCTCCGAAAAAGCCAATTCCGACTCCAACCAAAGACGACAAGCACTCCGCCGTCTCCGACCTCTTCGCCGCCGGCCACAAGTTCCGAAGCAAGCACAAGCCAATCGCCGCGTTCTGCGATTGGCTGATCGACAAGAACGTAAGCCACTCcggccaccaccaccactgcgaTCGCGACCGGGACCTCCTGCTTCCGCCGGAAACCGCCGTGAAGGATGCTGCCGTCGACCAGAGCTTCGACCGGCAGGTTTCGCTGCCGAGACTATCGAGCGGGAGCAGCTATGCGGGGAGCTTGTTTTCGGGGACGACGTTGGATGGCAATTTTTCCAGCGACATTAAGGAGGAAACGTCGTCGTCTCGCACACTCACTGCTATCCCTGCTCCAAGGCACAAGGAcgaggaggaagaagaggaggaggaacaGACCACAGAAAAGTTGGCGAAGAAGTCGAAAGAAAGCTACGTCTTGCAACTCACGTTAGCGAAGAGGCTCACTTGTTTGGCTAGCCTCGTGTCCGAGCCTGTTCTCGCTCCAGGAACCGAAACCTGGGATGCGGAATCCGTTTCTTATCGCCTATGGGTGAGTGGGTGTTTATCGTACACGGACAAGATATCTGATGGGTTTTATAACATATTGGGGATGAATCCGTATCTGTGGGTGATGTGTAATGACGTGGAGGAAGGTAGAAGGATACCTACTTTGATGGCGCTTAAAGCGGTTGAGCCAAGCGAGACTTGTATGGAGGTGGTGCTTGTTGATGGACACGAGGACTCTCGCTTGAAGCTGCTTCAAGATAAAGCGCAAGAGTTGTATTGTGCTTCCGAGAATACGTTGGTGTTGGTGGAACAACTAGGGAAACTTGTTGCCATTTACATGGGGGGTAACTTCCCGGTGGAGCAAGGGGATCTCCACAAGCGCTGGAAGATGGTTAGTAAGAAGTTGAGGAATTTTCACAAGTGTGTTGTGCTTCCCATTGGCAGCCTGTCTACTGGGCTTTGTAGGCATCGGGCAATTCTTTTTAAGAGATTGGCCGATTACATAGGTTTGCCCTGTCGCATAGCTCGAGGTTGCAAGTATTGTGTTGCAGATCATAGATCCTCTTGCCTGGTCAAAATTAAAGATGACAAGCAGCTCTCAAGACCTGTTAATCCTGAAAGTCTGCCATATTCAGGCTGTGGACAAAATGATCAACAAGTTAAAGAAACTGATTTGCTGAAAAATCGCAAGGGCTCCATTTATACTTCAGTTGATCAAATCTGTGAAGGAACAGAACCACCTCTAATTCCTTTTGGTTTAGAAGGGAATGATGAGGAATGTGCAGTTCTTAGTTCAATTTTGCCTACCATCCATGAAGATGTTTCTAAAGCTCTTCATCCAGCCATTAAAGCATCGTTCCATGAATATCCAAGGCTTAGTGAGGATGTAGTACAAGAAACTTCCAACAATGAGATCATTGTAACTGGAAGTTCTGTGGTGAGAAGTACTTTCAAGCAATCTATGCTTGCTTCATCCTGCCAATTAGAACTGAAACAGGTAGACAATAGAATTGAAAACCAGGGTTGTTTACCTGCTGGGAATATTCCAAGATATGTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATATCATGGGATGATTTACGCATTAAAGAGCGTGTCGGTGCTGGCTCATTCGGGACAGTGTACCATGCCGAATGGCACGGATCAGATGTTGCAGTCAAGGTTTTAACAGTTCAGGATTTCCATGATGATCAGTTGAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGGGTTCGCCATCCAAATGTGGTGCTCTTCATGGGGTCAGTTACAAAACCCCCCCATCTATCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATACCGACTGATACACAGGCCAGTATCTGGTGAAATTCTGGACAAGAGGAGGAGATTACGGATGGCTTTGGATGTGGCTAAAGGGATCAATTATCTTCACTGTCTGAAACCTCCAATTGTACACTGGGATCTCAAATCCCCAAACTTGTTAGTGGATAAAAATTGGACTGTGAAGGTTTGTGATTTTGGATTGTCCAGATTTAAGGCAAACACTTTCATACCGTCTAAATCTGTTGCTGGAACAcCTGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCCAATGAGAAATCTGACGTATACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCATGCAACAACCATGGAGTGGACTTAGCCCTGCCCAGGTGGTTGGAGCTGTTGCTTTCCAGAATAGGAGGCTTGCTATCCCTCTAAACATCTCTCCAGCATTGGCCTCCCTCATGGAATCTTGTTGGGCCGATGACCCAAGTGAACGCCCATCTTTTGCTGGCATAGTTGACTCACTAAAGAAGCTGGTAAAATCTCCAGCAGAGGTGATAAAGATGGGGGATACATAG 2601 0.4614 MPHRTTYFFPRQFPERGLDESSKQLLDHEKKKIFNSIKHDTFGAESDPPKKPIPTPTKDDKHSAVSDLFAAGHKFRSKHKPIAAFCDWLIDKNVSHSGHHHHCDRDRDLLLPPETAVKDAAVDQSFDRQVSLPRLSSGSSYAGSLFSGTTLDGNFSSDIKEETSSSRTLTAIPAPRHKDEEEEEEEEQTTEKLAKKSKESYVLQLTLAKRLTCLASLVSEPVLAPGTETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEEGRRIPTLMALKAVEPSETCMEVVLVDGHEDSRLKLLQDKAQELYCASENTLVLVEQLGKLVAIYMGGNFPVEQGDLHKRWKMVSKKLRNFHKCVVLPIGSLSTGLCRHRAILFKRLADYIGLPCRIARGCKYCVADHRSSCLVKIKDDKQLSRPVNPESLPYSGCGQNDQQVKETDLLKNRKGSIYTSVDQICEGTEPPLIPFGLEGNDEECAVLSSILPTIHEDVSKALHPAIKASFHEYPRLSEDVVQETSNNEIIVTGSSVVRSTFKQSMLASSCQLELKQVDNRIENQGCLPAGNIPRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVYHAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGSVTKPPHLSIVTEYLPRGSLYRLIHRPVSGEILDKRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQVVGAVAFQNRRLAIPLNISPALASLMESCWADDPSERPSFAGIVDSLKKLVKSPAEVIKMGDT 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3155 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Ssu1g3155 866 MobiDBLite consensus disorder prediction 157 171 - -
Ssu1g3155 866 ProSitePatterns Protein kinases ATP-binding region signature. 602 623 IPR017441 GO:0005524
Ssu1g3155 866 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 548 864 - -
Ssu1g3155 866 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 105 427 - -
Ssu1g3155 866 SUPERFAMILY Protein kinase-like (PK-like) 574 849 IPR011009 -
Ssu1g3155 866 Pfam Protein tyrosine and serine/threonine kinase 596 850 IPR001245 GO:0004672|GO:0006468
Ssu1g3155 866 PRINTS Tyrosine kinase catalytic domain signature 711 729 IPR001245 GO:0004672|GO:0006468
Ssu1g3155 866 PRINTS Tyrosine kinase catalytic domain signature 777 799 IPR001245 GO:0004672|GO:0006468
Ssu1g3155 866 PRINTS Tyrosine kinase catalytic domain signature 821 843 IPR001245 GO:0004672|GO:0006468
Ssu1g3155 866 PRINTS Tyrosine kinase catalytic domain signature 670 683 IPR001245 GO:0004672|GO:0006468
Ssu1g3155 866 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 548 864 - -
Ssu1g3155 866 Coils Coil 179 199 - -
Ssu1g3155 866 ProSiteProfiles Protein kinase domain profile. 596 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3155 866 Pfam Ethylene-responsive protein kinase Le-CTR1 232 423 - -
Ssu1g3155 866 CDD STKc_MAP3K-like 602 850 - -
Ssu1g3155 866 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 105 427 - -
Ssu1g3155 866 SMART serkin_6 596 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3155 866 Gene3D Transferase(Phosphotransferase) domain 1 675 862 - -
Ssu1g3155 866 MobiDBLite consensus disorder prediction 157 195 - -
Ssu1g3155 866 Gene3D Phosphorylase Kinase; domain 1 589 673 - -
Ssu1g3155 866 MobiDBLite consensus disorder prediction 37 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3155 Ssu-Chr1 82556243 82564273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3155 1 864 MAP Kinase Kinase Kinase AT4G24480 52.400 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Ssu1g3155 PK_Tyr_Ser-Thr 1.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3155 - - gmx:100786546 1221.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2514 6 59182068 59193687 Ssu1g3155 1 82556243 82564273 PCT
Ssu6g3415 6 76676451 76682892 Ssu1g3155 1 82556243 82564273 PCT