Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3152 ATGTACGGCCCCATGAACCAGATCGTCCCCGCCGAAGACAACGACGGCGCCGCCTCCGACCACCACATTCATTACAATTCCCACACCATCGAAGACGGCGGCGTCGAAGACGTTTCCGCCGACTCCGTCTACGTTCCGCCCCCTGACATCGCCATCCAAGACTCTAGCCAGCTCACGCTCTCGTTTCGTGGCCAAGTCTATGTCTTCGACGCCGTTACACCTGATAAGGTCCAGGCAGTGTTGTTGCTGTTGGGAGGAAGTGAACTAACCTCGGGTTCGCAATGTGTGGAGCCTCAAAATCAGAGGGGTGTGGTGGAATATCCTGCAAGATGTAGTCTACCACAACGAGCGGCGTCGTTAAGTAGGTTCCGTCAGAAGAGGAAGGAGCGGTGCTTTGATAAGAAAGTTAGATATGGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAACTAATAGTTGGGCTTCAGATCAAGAGTCAGGGCAGGATGCTGTTCAGTCAGAAACCTTGTGCACACATTGTGGAATAAGTTCAAAATCCACTCCAATGATGCGAAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAATAGGGGCACTTTGAGGGATCTTTCCAAGAGAAACCAGGAACACACTCTTGCACCACCTGAGCAGGTTGATGAGGGTAGTAAAAATGACTTGGACTGTCGGAGTGCTATCCCTGCACAACATAACAATCTTGTTAATGATAACACAGCTTTGGTATCTGATCTGTGA 816 0.4975 MYGPMNQIVPAEDNDGAASDHHIHYNSHTIEDGGVEDVSADSVYVPPPDIAIQDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGSELTSGSQCVEPQNQRGVVEYPARCSLPQRAASLSRFRQKRKERCFDKKVRYGVRQEVALRMHRNKGQFTSSKKQDGTNSWASDQESGQDAVQSETLCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHTLAPPEQVDEGSKNDLDCRSAIPAQHNNLVNDNTALVSDL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3152 271 ProSiteProfiles GATA-type zinc finger domain profile. 178 236 IPR000679 GO:0006355|GO:0043565
Ssu1g3152 271 SMART tify_2 51 86 IPR010399 -
Ssu1g3152 271 ProSiteProfiles CCT domain profile. 116 158 IPR010402 GO:0005515
Ssu1g3152 271 MobiDBLite consensus disorder prediction 157 174 - -
Ssu1g3152 271 Pfam tify domain 55 85 IPR010399 -
Ssu1g3152 271 Pfam GATA zinc finger 184 220 IPR000679 GO:0006355|GO:0043565
Ssu1g3152 271 PANTHER GATA TRANSCRIPTION FACTOR 25 13 253 - -
Ssu1g3152 271 ProSitePatterns GATA-type zinc finger domain. 184 211 IPR000679 GO:0006355|GO:0043565
Ssu1g3152 271 MobiDBLite consensus disorder prediction 1 21 - -
Ssu1g3152 271 Gene3D - 175 233 IPR013088 GO:0006355|GO:0008270
Ssu1g3152 271 PANTHER GATA TRANSCRIPTION FACTOR 28 13 253 IPR045280 GO:0006355
Ssu1g3152 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 231 - -
Ssu1g3152 271 Pfam CCT motif 116 158 IPR010402 GO:0005515
Ssu1g3152 271 CDD ZnF_GATA 184 229 IPR000679 GO:0006355|GO:0043565
Ssu1g3152 271 MobiDBLite consensus disorder prediction 150 174 - -
Ssu1g3152 271 ProSiteProfiles Tify domain profile. 51 86 IPR010399 -
Ssu1g3152 271 SMART GATA_3 178 231 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3152 Ssu-Chr1 82474533 82479479 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3152 47 270 Tify Gene Family AT4G24470 60.246 9.63e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu1g3152 CCT 6.3e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3152 - - pvu:PHAVU_009G035400g 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2516 6 59223415 59228216 Ssu1g3152 1 82474533 82479479 PCT