Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3142 AtgaggaagaaaaggaaaggaagcgAGACTGATGCGTCTGCGGATCTGGCTGTTATTTTGGCTCCTAATCATGGTTCTGCTTCGTCGAATTTGAAGTCCCACTACTCGCTGGAAGATTGTTCTAGGCTAAAGAAGAGGTGTAAGGAGGATGCTGACACTGAGCCAGCTGCTTCCTTTAAAAGGAGGCTTGCTGGCATTGCTACTGCCCCGCCTTGTGGGATGTCATCTTTGATCACACCGGGGAGAGGGCTCAAGAGGAAGATAGGTTGCATTGATGTTGCTACCCAGATGGGCAGGAAGAAGAAGATTGAGGATGATTATGTTTCTGGTGAGACAATTGGGCAAGGAAAGTTTGGGTCTGTTTGGTTGTGTCGGTCGAGGGTTAGTGGAGCAGAATATGCGTGTAAGACGCTGAGGAAGGGGGAGGAGACGGTTCATCGAGAGGTTGAGATTATGCAACACTTGTCGGGACATTCTGGGGTTGTGACACTGCAAGCAGTTTATGAAGAAGCGGAATGCTTTCATCTTGTGATGGAGTTGTGCTCTGGTGGACGACTCATTGATCGGATGGTTAAGGACGGTCCGTATTCAGAACAACGGGCTGCTAATGTACTCAAGGAAGTGATGTTGGTCATCAAGTATTGCCATGACATGGGAGTTGTGCACAGAGATATCAAACCTGAGAATATTCTGCTCACGGCATTGGGAAAAATAAAGCTTGCAGATTTTGGCTTGGCCATGAGAATTTCAGAAGGTCAGAACTTGACTGGTTTGGCTGGAAGCCCTGCCTATGTTGCCCCTGAAGTATTGTTAGGCAGATACTCTGAGAAGGTGGATATATGGAGTGCTGGTGTGCTCCTGCATGCTCTGTTGGTTGGCAGTCTTCCATTTCAAGGAGATTCATTGGAAGCAGTTTTTGAGGCTATTAAGACCGTCAAATTAGATTTCCAAACTGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTATTGGGAGAATGCTGACAAGGGATATTTCAGCACGGATATCAGCCGATGAAGTACTTAGACATCCATGGATATTGTTCTACACAGCACATACATTGACAATGCTGCCcatcaaaacaaaattgaagaacCAAATTGGTGCCACATGCCAACAGCTTGTTGCTGTACCTGAACCAAGGTTAGGAGGAAATAGGATAGACAATTACTCATTTAGCAAGGGTTCATCCTCTGAAAGCTGCAATTCAGATGATCAGGATGAGTGTGTGTTGATTGATGTGCTTGCCTCTGCAATTTCACATGTGAGGATATCTGAACCAAAGAGGAGCAGGTTGTGTGGTCCCACAGGTCCGATAGTTCAGCAAGGTTCATCTAACATGAAGGCTAACAACCTCTGTAAAGCATTTTGA 1398 0.4456 MRKKRKGSETDASADLAVILAPNHGSASSNLKSHYSLEDCSRLKKRCKEDADTEPAASFKRRLAGIATAPPCGMSSLITPGRGLKRKIGCIDVATQMGRKKKIEDDYVSGETIGQGKFGSVWLCRSRVSGAEYACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEAECFHLVMELCSGGRLIDRMVKDGPYSEQRAANVLKEVMLVIKYCHDMGVVHRDIKPENILLTALGKIKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLLGRYSEKVDIWSAGVLLHALLVGSLPFQGDSLEAVFEAIKTVKLDFQTGMWESISKPARDLIGRMLTRDISARISADEVLRHPWILFYTAHTLTMLPIKTKLKNQIGATCQQLVAVPEPRLGGNRIDNYSFSKGSSSESCNSDDQDECVLIDVLASAISHVRISEPKRSRLCGPTGPIVQQGSSNMKANNLCKAF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3142 465 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 457 - -
Ssu1g3142 465 SMART serkin_6 107 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3142 465 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Ssu1g3142 465 ProSiteProfiles Protein kinase domain profile. 107 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3142 465 CDD STKc_CAMK 106 354 - -
Ssu1g3142 465 SUPERFAMILY Protein kinase-like (PK-like) 98 372 IPR011009 -
Ssu1g3142 465 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 24 457 - -
Ssu1g3142 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Ssu1g3142 465 Pfam Protein kinase domain 107 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3142 465 Gene3D Transferase(Phosphotransferase) domain 1 98 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3142 Ssu-Chr1 82297003 82299352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3142 99 355 EF-hand Containing Proteins AT4G35310 44.569 2.10e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu1g3142 Pkinase 6.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3142 - - gmx:100812729 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3142 1 82297003 82299352 Ssu1g3142 1 82297003 82299352 ECH
Ssu6g2473 6 58226426 58229756 Ssu1g3142 1 82297003 82299352 PCT