Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3135 ATGTCCACTCCCACACTCAAACCGCACTCCAATTTCCACCATGGCCTGGCCAGtattattctctttcttttctatttctttcttctcacgCAGTTTCCGCCGCCGGCCACCGCGCAGCTCCCGAACACGctgccgccgccgccgccggaCCGGTTTTCGAAGCTGAAGTTCGACAAGTCCATGGCCATCGTTCTGGTGATCCTCGTCGTGGTGTTCTTCATCCTGGGGTTTCTCTCCGTGTACACGCGTCAGTGCGCGGAGCGAAGGGTGCGAGGGGGGTTCGAACTCGCGATCCCGATCGCGCGCCGGCAGCGCGGTCTGGACCGGGAAATCATCGACACGTTTCCCACGTTCGTGTACTCCGCCGTGAAGAGCCTCAAGATAGGGCGGGCCGCGCTAGAATGCGCCGTGTGCCTCAGCGAGTTCGAGGAGGACGAAACGCTACGTTTGATCCCCAAGTGCAGCCACGTGTTCCACCGCGACTGCATCGACGCGTGGCTCGCCAATCACTCCACCTGCCCCGTTTGCCGGGCCAACCTCGTTCCCAAACCCGGAGACCCGCTACCCGTCATCTCGGATCCGGAGCAGCCCGAGTTAAACGAACCGACCCGACCCGAAACTGAATGCACGGGGATTGCGCTTTCTCCGAAGGTGAATGAATCGATTAACCAGAACCGTCCGCCGCGGTCAAGGTCAACGGGTTTTAGAATCGCGAGTTGGTTTCCGCGGTCTCACTCGACGGGTCACTCGCTTGTTCAACCCGGGGAGAATTGCGAGCGGTTCACGTTACGTTTGCCCGAGGAAGTGCGGAACCAGCTGGTGATTTCCACGCTGAGCCGCACCAAGAGTTGCGGCGTCGGCGTGAGCGTGAGCGTGAGCGTGGCGTTCACGCGCGAGAATAGCGAGAGGAGGGGGTACAGGACAAGAAGCGTGGGTAGCGCTAGCAGCCCTCACGTGAGGGGCTACGATAGGCGTGGGTTTGGGTTTTCTCGGACCCGTTCAGCGAAGGAATCGATTAAGGATGATGTCGGAGAAAAATCTTCGGATCGGTTATTCTCGGGGACAAGGGATGGTGAGGTTTAG 1083 0.5688 MSTPTLKPHSNFHHGLASIILFLFYFFLLTQFPPPATAQLPNTLPPPPPDRFSKLKFDKSMAIVLVILVVVFFILGFLSVYTRQCAERRVRGGFELAIPIARRQRGLDREIIDTFPTFVYSAVKSLKIGRAALECAVCLSEFEEDETLRLIPKCSHVFHRDCIDAWLANHSTCPVCRANLVPKPGDPLPVISDPEQPELNEPTRPETECTGIALSPKVNESINQNRPPRSRSTGFRIASWFPRSHSTGHSLVQPGENCERFTLRLPEEVRNQLVISTLSRTKSCGVGVSVSVSVAFTRENSERRGYRTRSVGSASSPHVRGYDRRGFGFSRTRSAKESIKDDVGEKSSDRLFSGTRDGEV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3135 360 PANTHER RING FINGER DOMAIN-CONTAINING 19 292 - -
Ssu1g3135 360 MobiDBLite consensus disorder prediction 324 360 - -
Ssu1g3135 360 MobiDBLite consensus disorder prediction 301 360 - -
Ssu1g3135 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 182 IPR013083 -
Ssu1g3135 360 CDD RING-H2_PA-TM-RING 134 177 - -
Ssu1g3135 360 PANTHER RING-H2 FINGER PROTEIN ATL11 19 292 - -
Ssu1g3135 360 SUPERFAMILY RING/U-box 129 185 - -
Ssu1g3135 360 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Ssu1g3135 360 Pfam Ring finger domain 134 177 IPR001841 -
Ssu1g3135 360 SMART ring_2 135 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3135 Ssu-Chr1 82023931 82025013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3135 10 305 Rapid Response to Elicitors AT3G05200 39.016 1.73e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3135 K10664 - gmx:100805815 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3135 1 82023931 82025013 Ssu1g3135 1 82023931 82025013 ECH