Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3134 ATGTCCACTCCCACACTCAAACCGCACTCCAATTTCCACCATGGCCTGGCCAGtattattctctttcttttctatttctttcttctcacgCAGTTTCCGCCGCCGGCCACCGCGCAGCTCCCGAACACGctgccgccgccgccgccggaCCGGTTTTCGAAGCTGAAGTTCGACAAGTCCATGGCCATCGTTCTGGTGATCCTCGTCGTGGTGTTCTTCATCCTGGGGTTTCTCTCCGTGTACACGCGTCAGTGCGCGGAGCGAAGGGTGCGAGGGGGGTTCGAACTCGCGATCCCGATCGCGCGCCGGCAGCGCGGTCTGGACCGGGAAATCATCGACACGTTTCCCACGTTCGTGTACTCCGCCGTGAAGAGCCTCAAGATAGGGCGGGCCGCGCTAGAATGCGCCGTGTGCCTCAGCGAGTTCGAGGAGGACGAAACGCTGCGTTTGATCCCCAAGTGCAGCCACGTGTTCCACCGCGACTGCATCGACGCGTGGCTCGCCAATCACTCCACCTGCCCCGTTTGCCGGGCCAACCTCGTTCCCAAACCCGGAGACCCGCCACCCGTCATCTCGGATCCGGAGCAGCCCGAGTTAAACGAGCAGACCCGACCCGAAACTGACTGCACGGGGATTGCGGTTTCTCCGAAGGTGAATGAATCGATTAACCAGAACCGTCCACCGCGGTCAAGGTCAACGGGTTTTAGAATCGCGAGTTGGTTTCCGCGGTCTCACTCGACGGGTCACTCGCTGGTTCAACCCGGGGAGAATTGCGAGCGGTTCACGTTACGTTTGCCCGAGGAAGTGCGGAACCAGCTGGTGATTTCCACGCTGACCCGCACCAAGAGTTGCGGCGTCGGCGTGAGCGTGGCGTTCACGCGCGAGAATAGCGAGAGGAGGGGGTACAGGACAAGAAGCGTGGGTAGCACTAGCAGCCCTCACGTGAGGGGCTACGATAGGCGTGGGTTTGGGTTTTCTCGGACCCGTTCAGCGAAGGAATCGATTAAGGATGATGTCGGAGAAAAATCTTCGGATCGGTTATTCTCGGGGACAAGGGATGGTGAGGTTTAG 1071 0.5696 MSTPTLKPHSNFHHGLASIILFLFYFFLLTQFPPPATAQLPNTLPPPPPDRFSKLKFDKSMAIVLVILVVVFFILGFLSVYTRQCAERRVRGGFELAIPIARRQRGLDREIIDTFPTFVYSAVKSLKIGRAALECAVCLSEFEEDETLRLIPKCSHVFHRDCIDAWLANHSTCPVCRANLVPKPGDPPPVISDPEQPELNEQTRPETDCTGIAVSPKVNESINQNRPPRSRSTGFRIASWFPRSHSTGHSLVQPGENCERFTLRLPEEVRNQLVISTLTRTKSCGVGVSVAFTRENSERRGYRTRSVGSTSSPHVRGYDRRGFGFSRTRSAKESIKDDVGEKSSDRLFSGTRDGEV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3134 356 MobiDBLite consensus disorder prediction 320 356 - -
Ssu1g3134 356 MobiDBLite consensus disorder prediction 297 356 - -
Ssu1g3134 356 CDD RING-H2_PA-TM-RING 134 177 - -
Ssu1g3134 356 PANTHER RING-H2 FINGER PROTEIN ATL11 19 292 - -
Ssu1g3134 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 182 IPR013083 -
Ssu1g3134 356 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Ssu1g3134 356 PANTHER RING FINGER DOMAIN-CONTAINING 19 292 - -
Ssu1g3134 356 SUPERFAMILY RING/U-box 129 189 - -
Ssu1g3134 356 Pfam Ring finger domain 134 177 IPR001841 -
Ssu1g3134 356 SMART ring_2 135 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3134 Ssu-Chr1 81979507 81980577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3134 10 301 Rapid Response to Elicitors AT3G05200 39.867 3.35e-63 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3134 K10664 - gmx:100805815 442.965