Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3133 ATGGCACTAGAGGCTGTGGTTTTCCCACAAGATCCATTTACATATGGTTGCAAGGATTATTTGTACTCCTTAGTAGGAGGTGGAGCTGGTAGCAGTGGAGGTTGGAGCCACAACTACGGTTTCCAAGCGGCAGAAGAAGAGAAAGTCCTCCTTGgaatcatcaacaacaacatagAACAGAATCTTCATGCAAACTGGGATTCTTCTTCTACCTCGGTCCTGcaaaatttcaaggaccaatGTGATTCCCACTCTTCCCCTGAGGCCTGCACCGTTGATCAATCTGTCACCGCACCTGCGGACGCCACCGTGACCACCACGAGCCGCCGCAAACGACGTCGCACCAAGAGCGCCAAGAACAAAGAGGAAATCGAGAACCAGAGGATGACCCACATTGAAGTTGAACGCAACCGCCGAAAACAGATGAACGAGTACTTGTCCGTGCTCCGATCCCTGATGCCTTCTTCTTATGTTCAAAGGGGCGACCAAGCGTCTATTATTGGAGGCGCGATTAACTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCGATGGGGGGTCGAAAGAGAACGGACCAAGCGAACGAGAATGTCGGCGTAAATGGGTCACCCTTTGCTGAGTTCTTCACGTTTCCTCAGTACACGACGCGTGCAACGCAGAGCAACAGGGGCACGACGACGATGGCACAGAACCAGGAACAGAAACAGTGGGCCGTAGCGGACATTGAAGTGACCGTGGTGGACAGTCATGCCAACCTAAAGATACTCTCAAAGAAACAACCCGGGCAGCTTATGAAGATTGTTGTCGGGCTTCAAAGTCTCAGGCTCAGCATTCTCCACCTTAACGTTACCACCCTCGACGATATGGTCCTTTACTCAATTAGCGTcaagGCAGAGGACGGGTGTCAGTTGAACACGGTCGATGAAATTGCGGCTTCAGTGAATCAACTATTTCGCACAATCCAAGAAGTTACGTTCAACTGA 981 0.4883 MALEAVVFPQDPFTYGCKDYLYSLVGGGAGSSGGWSHNYGFQAAEEEKVLLGIINNNIEQNLHANWDSSSTSVLQNFKDQCDSHSSPEACTVDQSVTAPADATVTTTSRRKRRRTKSAKNKEEIENQRMTHIEVERNRRKQMNEYLSVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMGGRKRTDQANENVGVNGSPFAEFFTFPQYTTRATQSNRGTTTMAQNQEQKQWAVADIEVTVVDSHANLKILSKKQPGQLMKIVVGLQSLRLSILHLNVTTLDDMVLYSISVKAEDGCQLNTVDEIAASVNQLFRTIQEVTFN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3133 326 Pfam Helix-loop-helix DNA-binding domain 127 178 IPR011598 GO:0046983
Ssu1g3133 326 Gene3D - 116 195 IPR036638 GO:0046983
Ssu1g3133 326 CDD bHLH_AtFAMA_like 129 196 - -
Ssu1g3133 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 177 IPR011598 GO:0046983
Ssu1g3133 326 SMART finulus 132 183 IPR011598 GO:0046983
Ssu1g3133 326 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 322 - -
Ssu1g3133 326 PANTHER MAX DIMERIZATION, MAD 1 322 - -
Ssu1g3133 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 189 IPR036638 GO:0046983
Ssu1g3133 326 MobiDBLite consensus disorder prediction 95 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3133 Ssu-Chr1 81899177 81900710 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3133 1 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.265 2.29e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g3133 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3133 - - gmx:100789380 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3133 1 81899177 81900710 Ssu1g3133 1 81899177 81900710 ECH