Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3128 ATGGCGCTACTACGTCTTGTGTGCTTAAGTTCAACAAATCAGTTATCCATTCAACCCCATTCCCAATCCCCCCTTTTCTCTCCCCTTCGCAAGACACTCAATTCCCAATCCATCAATATCAACCTCCCCAATCCCTCTTCCTTTCACCTTCCACGCCTGTCCCTCGCTCACACCCCAGCCCTTATCGCAACCAAACAAGCCCCTAACCTCGCCTCCACTTCCCAACAACAAACCGAGCCAGACGCCGAAGAATTTTCTCGCACCAGGTTGCTCGCTCAGAACGTGCCCTGGACAAGCACCCCCGAAGACATTCGCTCTTTGTTCCAAAAACATGGAAAAGTCCTCGACGTCGAGCTTTCTATGCATAACAAAACCAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCCCCCGAAGAGGCCCTCGCGGCTCTCAACAATCTCGAATCGTATGAGTTTGAGGGTCGTGTGATGAAAGTCAATTATGCTCGgcccaaaaagaagaaaacgcCGCCCCCTGTGAAACCAAAGCCTGTGGTGACTTTTAACTTGTTTGTTGCTAACTTGTCCTACGAAGCGAGGTCCAAAGATCTCAGGGAGTTTTTTGATTCGGGAACTGGTAGAGTTGTTTCTGCTGAGGTTGTGTTTCATGATAGTCCTAGAAGGTCGTCTGGTTATGGATTTGTGGCCTTCAAGTCTAAGAAAGAAGCGGATGCTGCTCTTTCTGAGTTCCAAGGAAAGGTTTTTATGGGAAGGCCAATCAGGGTGGATCGTAGTCGGCAATTTGTTCAACAACCAGTGGAGGGGAGTGTAAAGTCTGAAGACACCCCTTCTGAGTTGAGTGTGAATGAGGCAGAAGCAGACAAAGCTGATTGA 876 0.4795 MALLRLVCLSSTNQLSIQPHSQSPLFSPLRKTLNSQSININLPNPSSFHLPRLSLAHTPALIATKQAPNLASTSQQQTEPDAEEFSRTRLLAQNVPWTSTPEDIRSLFQKHGKVLDVELSMHNKTRNRGLAFVEMGSPEEALAALNNLESYEFEGRVMKVNYARPKKKKTPPPVKPKPVVTFNLFVANLSYEARSKDLREFFDSGTGRVVSAEVVFHDSPRRSSGYGFVAFKSKKEADAALSEFQGKVFMGRPIRVDRSRQFVQQPVEGSVKSEDTPSELSVNEAEADKAD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3128 291 Gene3D - 169 273 IPR012677 -
Ssu1g3128 291 PANTHER OS08G0483200 PROTEIN 1 290 - -
Ssu1g3128 291 MobiDBLite consensus disorder prediction 263 280 - -
Ssu1g3128 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Ssu1g3128 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 255 IPR000504 GO:0003723
Ssu1g3128 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 159 IPR000504 GO:0003723
Ssu1g3128 291 Gene3D - 62 168 IPR012677 -
Ssu1g3128 291 SMART rrm1_1 89 161 IPR000504 GO:0003723
Ssu1g3128 291 SMART rrm1_1 183 257 IPR000504 GO:0003723
Ssu1g3128 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Ssu1g3128 291 SUPERFAMILY RNA-binding domain, RBD 176 264 IPR035979 GO:0003676
Ssu1g3128 291 MobiDBLite consensus disorder prediction 260 291 - -
Ssu1g3128 291 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 290 - -
Ssu1g3128 291 SUPERFAMILY RNA-binding domain, RBD 73 173 IPR035979 GO:0003676
Ssu1g3128 291 CDD RRM_SF 184 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3128 Ssu-Chr1 81834330 81835837 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3128 88 266 Eukaryotic Initiation Factors Gene Family AT3G16380 31.313 4.18e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3128 - - gmx:100790439 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3128 1 81834330 81835837 Ssu1g3128 1 81834330 81835837 ECH