Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3117 ATGGCGAGCAGAAGCGATAGCCAAGTAAACTTTGGCAAGCCAATAAGATGCAAAGCTGCAGTATGTAGAAAAGCAGGTGAACCTCTTATTATAGAGGAAGTTGAGTTAGACCCACCAAAGGCCTGGGAGGTCCGGATCAAGATTTTATGCACGGCTCTGTGTCACTCTGATGTAACCTGTTGGAAAATTGATTCAGGGCCAGGTGCTAAATTTCCAAGAATTTTCGGACACGAAGCCGTGGGGGTGGTAGAGAGCGTGGGGGAGCACGTGGAAGAAGTTAAAGAGGGGGACCTAGTGGTGCCAGTGTTCTTAGCAAACTGTGGGGAGTGCAGTGACTGCAAAAGCCCAAAAAGTAACATGTGCTCCAAATTCAGGAGCAAGTGGTTTGATAACATGCCCAGAGACGGGACCAGCAGGTTTAGGGACATGAAAGGAGAAGCGGTGTACCATTTTATGAGTGTTAGCAGCTTCTCTGAGTACACGGTGGTGGATTTTACCCATGTCGTCAAAATTAGCCATGAGTTTCCTGTTGATAAGGCTTGCTTGCTTAGTTGCGGAGTTTCAACAGGGGTGGGGGCAGTATGGAAGGTGGCTGACGTAGAAGAAGGGTCCACAGTGGCTATTTTTGGGCTTGGCACCGTAGGCCTAGCTGTTGCTATAGCAGCAAAGCAACGAGGCGCTTCCAAGATCATAGGCATCGATCTAAATCCCGACAAATTGGAACTAGGAAAAAGATTTGGAGTCACTGATTTTGTGAATCCTTCCACTTGCAAAGAGAAGTCAGTGAGCGAGGTGATTAAGGAAATGACAAATGGAGGTGCTGATTATTGCTTCGAGTGCATAGGCTTGGCTTCATTGATGGCGGACGCTTTTAATAGCAGCCGAGATGGCTGGGGGAAAACGGTTATATTAGGGGTGGAAATGCATGGCTCCCCACTGACTCTGAATCCTTATCACCTAATGTACGGCAAAACTGTAATCGGATCCCTATTTGGAGGCATCAAACCCAAATCTGATGTTCCCTTCCTTGCCAAGACGTACTTAGACAAAAAGCTTAGCTTGGATGGCTTCATATCGCATGAGGTGGGCTTTGAGGACATCAACAAAGCTTTTGACTATCTCCTGGAAGGAAAGAGCCTCCGCTGCATTATAAGGATGGATCATTAA 1167 0.4713 MASRSDSQVNFGKPIRCKAAVCRKAGEPLIIEEVELDPPKAWEVRIKILCTALCHSDVTCWKIDSGPGAKFPRIFGHEAVGVVESVGEHVEEVKEGDLVVPVFLANCGECSDCKSPKSNMCSKFRSKWFDNMPRDGTSRFRDMKGEAVYHFMSVSSFSEYTVVDFTHVVKISHEFPVDKACLLSCGVSTGVGAVWKVADVEEGSTVAIFGLGTVGLAVAIAAKQRGASKIIGIDLNPDKLELGKRFGVTDFVNPSTCKEKSVSEVIKEMTNGGADYCFECIGLASLMADAFNSSRDGWGKTVILGVEMHGSPLTLNPYHLMYGKTVIGSLFGGIKPKSDVPFLAKTYLDKKLSLDGFISHEVGFEDINKAFDYLLEGKSLRCIIRMDH 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3117 388 Gene3D - 190 329 - -
Ssu1g3117 388 Pfam Zinc-binding dehydrogenase 214 333 IPR013149 -
Ssu1g3117 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 349 IPR036291 -
Ssu1g3117 388 SUPERFAMILY GroES-like 11 196 IPR011032 -
Ssu1g3117 388 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
Ssu1g3117 388 Pfam Alcohol dehydrogenase GroES-like domain 43 171 IPR013154 -
Ssu1g3117 388 Gene3D - 21 382 - -
Ssu1g3117 388 SUPERFAMILY GroES-like 337 385 IPR011032 -
Ssu1g3117 388 PANTHER ALCOHOL DEHYDROGENASE-LIKE 2 8 386 - -
Ssu1g3117 388 PANTHER ALCOHOL DEHYDROGENASE 8 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3117 Ssu-Chr1 81655829 81665079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3117 43 374 Monolignol Biosynthesis Gene Families AT2G21730 25.893 6.63e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3117 K00121 - qsu:112023922 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3117 1 81655829 81665079 Ssu1g3117 1 81655829 81665079 ECH