Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3115 ATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTGTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAAATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAACTAACCGTGGAGGAGAGGAACCTCCTCTCCGTGGCGTACAAGAACGTGATCGGAGCGCGGCGCGCGTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGACCACGTCTCGGTCATCCGCGACTACAGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATTCTCAAGCTCCTCGACTCTCGCCTCATTCCCTCCGCCTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGCGATTACCACAGGTACCTCGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCGCTGCTTACAAATCCGCTCAGGACATTGCGAATGCCGAACTGCCTCCAACTCATCCAATTAGGCTCGGCCTTGCTCTGAACTTCTCTGTATTTTACTATGAAATCCTTAACTCTCCCGATCGTGCTTGCAACCTTGCAAAACAGGCTTTTGATGAAGCCATTGCTGAATTGGATACACTGGGAGAGGAGTCATACAAGGATAGCACTTTGATCATGCAACTTCTTCGTGATAACCTCACCCTTTGGACCTCTGACATGCAGGATGATGGAGCAGATGAAATTAAAGAAGCAGCACCGAAACAGGATGATCAGTAA 780 0.5513 MAAAPSPREENVYMAKLAEQAERYEEMVEFMEKVSAAADNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLAAYKSAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAAPKQDDQ 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3115 259 Gene3D - 2 251 IPR036815 -
Ssu1g3115 259 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Ssu1g3115 259 PIRSF 14-3-3 2 250 IPR000308 -
Ssu1g3115 259 Coils Coil 14 41 - -
Ssu1g3115 259 SMART 1433_4 8 251 IPR023410 -
Ssu1g3115 259 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Ssu1g3115 259 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Ssu1g3115 259 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Ssu1g3115 259 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Ssu1g3115 259 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Ssu1g3115 259 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Ssu1g3115 259 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Ssu1g3115 259 Pfam 14-3-3 protein 14 238 IPR023410 -
Ssu1g3115 259 PANTHER 14-3-3-LIKE PROTEIN 16R-RELATED 5 253 - -
Ssu1g3115 259 PANTHER 14-3-3 PROTEIN 5 253 IPR000308 -
Ssu1g3115 259 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3115 Ssu-Chr1 81595454 81597273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3115 6 255 14-3-3 family AT1G78300 92.430 1.84e-171 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3115 K06630 - gmx:100529128 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3115 1 81595454 81597273 Ssu1g3115 1 81595454 81597273 ECH