Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3114 ATGGAGTCTCAGAGAGATCGCAGGACAGATGCTCTTGGAGATCTTCGAGTCCTTCCCGACGAAATCCTCTGCGCTATTTTGGAACGTCTCACTCCCCGATATGCTGCTCGCGTCGCTTGCGTTAGCAGTGTGATGTACATACTGTGCAATGAAGAACCACTGTGGATGAGTCTATGCCTAAAAGGAGCATCTGGTTTGCTTCAATACAAAGGCTCTTGGAAAAAAACTGCCCTGCATAATGAGAATCTGCCAGACAAATACAAAGAGTACCATCGAGGGCCTCTATGCTTTGATGGGTTCAACTCTTTATTTTTGTACAGGAGATTATACCGCTGTCATACCACATTGGATGCATTTTATGCAGATAACGGAAATGTGGAAAGAATAAAAGACATCTCACTCAAGGACTTCTATAACGAGTATGATGCAAAGAAACCGGTTATGCTTACTGGATTGGCTGATACATGGCCTGCCAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTATGGAGATGTAgcatttaaaatttctcaaaggAGTTCACGGAAGATCTCCATGAAGTTCAAGGATTATGTCTCATACATGAAAGTTCAGCATGATGAAGATCCCTTgtatatttttgatgaaaagTTTGGTGAAGCTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATACAGATAAACGGCCATCCTATAGGTGGCTCATAGTTGGACCAGAGAGATCTGGTGCCTCCTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTGTGGCCGTAAACGGTGGGCATTATATCCTCCAGGAAAAGTGCCTTTGGGTGTGACAGTGCATGTTAATGAAGAAGATGGCGATTTCAATATTGAGACTCCATCATCCCTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAGTGTACACAACTACCTGGAGAAACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTGCTAAATTTGGAAACAACTATTGCTGTCACGCAGAATTTTGTGAATTCCAACAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGCCGTGTTGGGTTGCTTGCTCTTGATGAAGATAGTTATGAAAATGTCGGACAGAATGTGTCATGTGATGAAAAGGACTCAAGTTACTCTGATTTTTcaaggaaagagaaaagagcCAAAACTCAGAAAGATGTAGATGATCTATATTATGAAAGAGCTATAAATGGTGTATCTAGAAGCTACAATTTATGGAAAGATGGATTTTCCTATGATATAAACTTCTTGTCCATGTTTTTGGATAAAGACAGAGACCACTACAGTTCCCTGTGGAGCTCAGGCAACAGCATTGGTCAGCGAGAACTAAGAGAATGGTTATCCAAGCTCTGgattcaaaaaccaaaaatgagAGAGCTAATATGGAAGGGAGCATGTATTGCACTAAATGCCGACAAATGGTTAGAATGCCTATCAAAAATTTGTGCCTTCCATAATTTAACCCCTCCCACTGATGATGAAAGGCTTCCAGTTGGTACCGGTAGCAATCCTGTTTATTTAGTGGGAAACTCTGTTGTTAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTGGAGTTTCACAGTCTGTTGCATGAAGCCAACTCCCCTCTCAATAAACATATTCCTAATGTTTTGGCCACTGGGATTGTTTATCTTGAAAATGGATCTTATACCAATTTAAGTTGGGATGGAAAAGGAGTCCCTGATGTTATTGAGAAGAGCAATCTGATCAAGAAGAAATGCGACATTGATGGTTACTCATTTGGGGTATGGGGCAAGAAACAGTTAGAGTATAGGAATGCTGGGATGCCGGTGGATGAATCAGTTAGTTTAGCTGGTCACTCAAGCATATGGCCATATATGATAACAAAACGATGTGAAGGGAATATGTTTGCAGATTTAAGAGACAGACTAACATGGGAAGATACATCAAACTTGGCCTCCTTCTTGGGGGAGCAGCTTCGCCACCTTCATCTTTTGCCATATCCACCTCTAAATATTTCATCTTTCTCTGATATTGAACATGAATTAAGCTTGGCTGAGGCTAATGGTTGCATTGCAACTGTTAATTGTAAATCAAATGCTGCAGCAGAATGGGGGCTCTTCACCGGTACCTTAGCAAAGATGAGGAAGGACTTGTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTAGCAAACTGATAGAGAAGATTGATGAATATATCCCACCTGATTTCGCTAAGTTGCTAAATATAACTGAGAATTTTGGAAATGGTGCTTGTAAACGTTGCTCCTGGATACACTCTGACATTATGGATGATAACATTTACATGAAACCAACGTTGGTTTGCTCTACCATCAGTGGGAATACTGAAGATACCACCATGGCGGACAATAGTTTGTTGTGTAATTATGATGAAGTAAAATCGTGGTGTCCTAGTCATATTCTTGATTTCAGCGATCTTTTGATAGGCGATCCTCTTTTTGACTTGATACCAATTTATCTAGATGTGTTTAGAGGTGATTCGCATCTCCTTGAGCGGTTTTTAGAAAGTTACAAACTTCTTTTTGCTAGTAACTTATCAAGGTGTGAGTCAACAGAGGGTGGTCAAAAGGTTGGCCGACTTTCGTATGCTGCCATGTGCTACTGTATCTTGCATAATGATAATGTCTTGGGAGCTATTTTTAGCATATGGGAAGAACTGAGATCAGCAAAGTCATGGGAAGAAGTTGAACTGACTGTGTGGGGAGAGTTGAACAATTACAAAGGCTTTCTTTGA 2910 0.4003 MESQRDRRTDALGDLRVLPDEILCAILERLTPRYAARVACVSSVMYILCNEEPLWMSLCLKGASGLLQYKGSWKKTALHNENLPDKYKEYHRGPLCFDGFNSLFLYRRLYRCHTTLDAFYADNGNVERIKDISLKDFYNEYDAKKPVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQRSSRKISMKFKDYVSYMKVQHDEDPLYIFDEKFGEAAPSLLKDYCVPHLFQEDFFDILDTDKRPSYRWLIVGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEEDGDFNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALDEDSYENVGQNVSCDEKDSSYSDFSRKEKRAKTQKDVDDLYYERAINGVSRSYNLWKDGFSYDINFLSMFLDKDRDHYSSLWSSGNSIGQRELREWLSKLWIQKPKMRELIWKGACIALNADKWLECLSKICAFHNLTPPTDDERLPVGTGSNPVYLVGNSVVKIFVEGGLEASLYGLGTELEFHSLLHEANSPLNKHIPNVLATGIVYLENGSYTNLSWDGKGVPDVIEKSNLIKKKCDIDGYSFGVWGKKQLEYRNAGMPVDESVSLAGHSSIWPYMITKRCEGNMFADLRDRLTWEDTSNLASFLGEQLRHLHLLPYPPLNISSFSDIEHELSLAEANGCIATVNCKSNAAAEWGLFTGTLAKMRKDLSSRLTKWGDPIPSKLIEKIDEYIPPDFAKLLNITENFGNGACKRCSWIHSDIMDDNIYMKPTLVCSTISGNTEDTTMADNSLLCNYDEVKSWCPSHILDFSDLLIGDPLFDLIPIYLDVFRGDSHLLERFLESYKLLFASNLSRCESTEGGQKVGRLSYAAMCYCILHNDNVLGAIFSIWEELRSAKSWEEVELTVWGELNNYKGFL 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3114 969 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 4 902 - -
Ssu1g3114 969 SMART cupin_9 210 373 IPR003347 -
Ssu1g3114 969 SUPERFAMILY Clavaminate synthase-like 123 370 - -
Ssu1g3114 969 Pfam F-box-like 17 61 IPR001810 GO:0005515
Ssu1g3114 969 Pfam Cupin-like domain 143 365 IPR041667 -
Ssu1g3114 969 Gene3D Cupin 110 363 - -
Ssu1g3114 969 SUPERFAMILY F-box domain 5 64 IPR036047 GO:0005515
Ssu1g3114 969 SUPERFAMILY Protein kinase-like (PK-like) 667 896 IPR011009 -
Ssu1g3114 969 Gene3D - 4 89 - -
Ssu1g3114 969 ProSiteProfiles JmjC domain profile. 215 378 IPR003347 -
Ssu1g3114 969 ProSiteProfiles F-box domain profile. 12 58 IPR001810 GO:0005515
Ssu1g3114 969 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 4 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3114 Ssu-Chr1 81577342 81587648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3114 4 965 Glycosyltransferase AT1G78280 61.885 0.0 1216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu1g3114 Cupin_8 4e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3114 - - gmx:100792541 1834.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3114 1 81577342 81587648 Ssu1g3114 1 81577342 81587648 ECH