Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3108 ATGAGTGAGACGGTGAGTCTTCATGCACAAACAAGGACACCCATTTCTTCTTTGGATGCCATGGCTCATCACCACCCACATTATCGGTCACAGTTCGGAGACACAACGTTCACAAAATTGTTCGTGGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCGAGCAGTTCGGGGACATTCTTGAGGCTGTCATAATCACTGACAAGAACACGGGAAAATCCAAAGGCTACGGATTCGTAACATTCTGCGATCGGGAATCAGCAAGAAGGGCGTGTGCTGATCCAAACCCAACAATAGATGGAAGAAGAGCAAATTGTAATATTGCTTCTCTTGGAAGAACTCGACCATCACCACCTAGAGGGAGGAATACAGTTCAAGGTGGAGGAGGAACAGCACAGGGTGTTCCGGGAGCGGGACCACCGTCACTGCCGCCACCACCTCCTGTTCTGTATCCACCATATGGCTATACAACCTACACTCCTGCTGATTATGGGTACCAACAAGCCACATTGTACAACCCACAGATTCAGCAACCACAATACTATCAACAACTTTATGGAGCATCATCTTCTACCATGAGCACCCCATATTACTACGGTTATTCCGTGCAACCACCAAGAAACACATTTTCTTCACCCCAAGCAAATCGCCTATCACCTGGACCGTCCTATCTATACTACCCTACACCCATGGAAGTCTCATTCTCTGGATATCGTCCACCCCAACAATCACCAATGAGGCAACCCTTTCCTTCCCCTAATGATTCAGAGAGTCAGCAGCGTACCTCCTCTGAAACAGCTGCCGGGGTAGCTATAACTTCAGAAAGTTCAAATACCCAAGGGAagaactaa 864 0.4769 MSETVSLHAQTRTPISSLDAMAHHHPHYRSQFGDTTFTKLFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFCDRESARRACADPNPTIDGRRANCNIASLGRTRPSPPRGRNTVQGGGGTAQGVPGAGPPSLPPPPPVLYPPYGYTTYTPADYGYQQATLYNPQIQQPQYYQQLYGASSSTMSTPYYYGYSVQPPRNTFSSPQANRLSPGPSYLYYPTPMEVSFSGYRPPQQSPMRQPFPSPNDSESQQRTSSETAAGVAITSESSNTQGKN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3108 287 MobiDBLite consensus disorder prediction 239 287 - -
Ssu1g3108 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 120 IPR000504 GO:0003723
Ssu1g3108 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Ssu1g3108 287 MobiDBLite consensus disorder prediction 113 152 - -
Ssu1g3108 287 Gene3D - 8 136 IPR012677 -
Ssu1g3108 287 PANTHER GEO13361P1-RELATED 24 277 - -
Ssu1g3108 287 SMART rrm1_1 39 111 IPR000504 GO:0003723
Ssu1g3108 287 CDD RRM_RBM24_RBM38_like 38 113 - -
Ssu1g3108 287 MobiDBLite consensus disorder prediction 240 287 - -
Ssu1g3108 287 SUPERFAMILY RNA-binding domain, RBD 23 141 IPR035979 GO:0003676
Ssu1g3108 287 PANTHER - 24 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3108 Ssu-Chr1 81437974 81442073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3108 34 114 C2H2 Transcription Factor Family AT2G19380 40.741 3.29e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3108 K25006 - gmx:100811977 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2436 6 57199905 57204794 Ssu1g3108 1 81437974 81442073 PCT