Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3102 atggATAAGTTATGCTGTTTTAAGGCTTCCTACTCTCAGGACTATTCAATTTCTGTGTTGGTTGCTTTACAGCTTGTAGCAGCACGTTCTTCTTCCAGCACTGGTAAGGGGAAAAATCATGAAGGCTCAATAAAATATGGTTTCAGCCTTGTAAAAGGGAAAGCTAATCACCCAATGGAGGATTATCATGTTGCCAAGTTTGCGCAGATAAAGGATAACGAATTGGGTTTATTTGCTATTTATGATGGTCACTTGGGTGACCGTGTACCTGCCTACTTGCAGAAAAATTTGTTTACCAACATTTTGAGAGAGGAGGAATTTTGGGAGGACCCCACTCTTTCTATCTCGAAAGCATATGAGAGCACAGATCAGGAAATTCTATCACATAGTTCTGATCTTGGACGTGGTGGATCAACAGCCGTAACTGCTATATTGATGAATGGACGAAGATTATGGATAGCTAATGTTGGAGACTCACGAGCTGTTCTTTCAAGAAAAGGTCAAGCTGTACAAATGACTACAGACCATGAGCCGAGCACAGAACGAGGCAGCATTGAGAATAGAGGTGGTTTTGTCTCCAACTTGCCAGGTGATGTGCCCAGAGTAAATGGACAACTTGCTGTTTCTCGTGCATTTGGAGACAAGAGTCTCAAGTTACATTTGCGATCAGACCCTGATGTACAAAATACTGACATAGATGTTGATACTGAGATGCTAATTCTTGCAAGTGATGGACTTTGGAAGGTAATGACTAATGAAGAAGCGGTGGATATTGCTAGAAGAGCGAGAGACCCACAGAAAGCAGCTAAGCAACTAACAGCTGAAGCATTAAAAAGAGACAGTAAAGATGATATATCTTGCGTTGTGGTTAAATTCAGGTAA 882 0.4116 MDKLCCFKASYSQDYSISVLVALQLVAARSSSSTGKGKNHEGSIKYGFSLVKGKANHPMEDYHVAKFAQIKDNELGLFAIYDGHLGDRVPAYLQKNLFTNILREEEFWEDPTLSISKAYESTDQEILSHSSDLGRGGSTAVTAILMNGRRLWIANVGDSRAVLSRKGQAVQMTTDHEPSTERGSIENRGGFVSNLPGDVPRVNGQLAVSRAFGDKSLKLHLRSDPDVQNTDIDVDTEMLILASDGLWKVMTNEEAVDIARRARDPQKAAKQLTAEALKRDSKDDISCVVVKFR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3102 293 ProSiteProfiles PPM-type phosphatase domain profile. 45 292 IPR001932 -
Ssu1g3102 293 SUPERFAMILY PP2C-like 43 292 IPR036457 -
Ssu1g3102 293 Pfam Protein phosphatase 2C 54 285 IPR001932 -
Ssu1g3102 293 SMART PP2C_SIG_2 56 292 IPR001932 -
Ssu1g3102 293 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 21 292 - -
Ssu1g3102 293 MobiDBLite consensus disorder prediction 168 188 - -
Ssu1g3102 293 Gene3D - 40 293 IPR036457 -
Ssu1g3102 293 CDD PP2Cc 44 292 IPR001932 -
Ssu1g3102 293 PANTHER PROTEIN PHOSPHATASE 2C 21 292 IPR015655 GO:0004722|GO:0006470
Ssu1g3102 293 SMART PP2C_4 41 290 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3102 Ssu-Chr1 81290785 81293406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3102 1 293 PP2C-type Phosphatase Gene Family AT1G22280 70.903 1.02e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3102 K17506 - gmx:100797292 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3102 1 81290785 81293406 Ssu1g3102 1 81290785 81293406 ECH