Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3099 ATGGGAAGGTCCCCATGCTGCGATGAGAATGGCCTTAAGAAAGGTCCTTGGACGCCCGAAGAAGATCAAAAGCTAGTTCAGCACATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTCCCTAAGCTAGCCGATCTTAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACTAACTATTTAAGGCCTGATATCAAGAGGGGAAAATTTTCTCAAGAAGAGGAGCAAACAATTCTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCAACCCATCTTCCAGGAAGGACTGACAATGAGATCAAGAATTTCTGGAATACtcatttaaagaaaaagttgattCAGATGGGTTTTGATCCAATGACTCACCAGCCTAGAACTGACCTTGTTTCCAGCTTGCCATATCTGCTAGCTTTGGCCAACATGACAGACCTTATGGATCATCAGTCATTGGATGAACATGCTGTGAGGTTGCAAGCAGAGGCAGTCCAGCTGGCAAAGCTTCAATACCTTCATTATCTAATCCAATCCTCAAACTCCTTAAGCACCAACTCCTATGACCAAAATGCCACCACAAACAACATGGAAGCTTTCAGTTTGTTAAACTCAATCTCCAATGTGAAAGAGAATCAAGTCATAGACTGCTTGCAACCAGATACTCCTGCCTCATTTTCTCATGCAATTGCTAGCTCTCAACCACTCCACCACCCAAGCATGCTACCTCACCTTTTAGAACCACAAGTCTCTTTCAGTTCACAATCATGTTTGAATAGTGAGATGGGTCAAGGTACTAACTTTGCAATGATAAGTCAAGGGGATCACACGGTTGATCATGATTCTTCCTGGATTATTCCATCTCCCGCTCCATCTATTCCTCCAAATGTGATAGGGACCTCAGCTAACAATCCAGGGGATGCCAGCAGCAGCACTTCTAGCTATGGAGGAGGACCCTCATCTTATTGGTCTGAACTTTTTTTTGAGGACCCCATCATGCATGAGCTATCttag 1017 0.4336 MGRSPCCDENGLKKGPWTPEEDQKLVQHIQKHGHGSWRALPKLADLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALANMTDLMDHQSLDEHAVRLQAEAVQLAKLQYLHYLIQSSNSLSTNSYDQNATTNNMEAFSLLNSISNVKENQVIDCLQPDTPASFSHAIASSQPLHHPSMLPHLLEPQVSFSSQSCLNSEMGQGTNFAMISQGDHTVDHDSSWIIPSPAPSIPPNVIGTSANNPGDASSSTSSYGGGPSSYWSELFFEDPIMHELS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3099 338 MobiDBLite consensus disorder prediction 295 317 - -
Ssu1g3099 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu1g3099 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu1g3099 338 CDD SANT 69 112 IPR001005 -
Ssu1g3099 338 SMART sant 13 63 IPR001005 -
Ssu1g3099 338 SMART sant 66 114 IPR001005 -
Ssu1g3099 338 CDD SANT 16 61 IPR001005 -
Ssu1g3099 338 Gene3D - 13 66 - -
Ssu1g3099 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 259 - -
Ssu1g3099 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu1g3099 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu1g3099 338 Gene3D - 69 116 - -
Ssu1g3099 338 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 259 - -
Ssu1g3099 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu1g3099 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu1g3099 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu1g3099 338 MobiDBLite consensus disorder prediction 296 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3099 Ssu-Chr1 81216672 81218027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3099 1 338 MYB Transcription Factor Family AT1G34670 56.065 4.47e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g3099 Myb_DNA-binding 6.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3099 K09422 - gmx:100811162 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3099 1 81216672 81218027 Ssu1g3099 1 81216672 81218027 ECH