Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3088 ATGATGACGAACCAAAATGTGGTGACTCATGAGGTTATTAACACGCTGATTGCCATGGCAGCGTCTATTTCAAACTCACCCGTGTTGCCAAGTGCAACAGTGCCAGAATCCCTGGCCTTGCTTGGTGGGTGTTGGGGCGTGCCCCATAAAAATCTTGTGAAAAGGTTGGAAGGAGCTAAAGTTAGCGCTTGGATTGATTCAATGAGAGCTTCTTCCCCAACTCGTGTCAAATCAGAGAGCCAAGAAAAAAGATCTTTTATTCTTTATCGTCCTTCAGCTCTGAACACGTTTGAGCAAATAATATGTAGTTCCAAGGGAAAGAAGATTGTAGTCTTTCTTGACTACGATGGAACTCTCTCCCCTATTGTCGCAGATCCAGATAAAGCTTTCATGACTAGAAAGATGAGAGCGACGCTAAAGGGCATAGCAAGACATTTTCCCACAGCCATCGTGACTGGAAGGTGCAGAGACAAGgtgTATAGCTTTGTAAAATTGGCAGAACTGTACTATGCCGGAAGCCATGGCATGGACATCACGGGGCCAACAAAAAGCCAAAGTCCAAAGCAAGGTAATAATAAAGCGGTGCTGTTCCAACCCGCGAGTCAATTCCTGCCCATGATCGATGAGGTGTACAAGATCTTAGTAGAAAAAACAAAGTCTGTCCCAGGGGCTAAGGTTGAGAACAATAAGTTTTGCTTGTCCGTGCACTTCCGTTGTGTTGACGAAAAGAGTTGGGCAGCGTTGGCGGAGAAAGTTGGATTGGTGCTCAATGAGTACCCACAACTTAGGCTAACCCAAGGGAGAAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGCAAGGCTCTTGAGTTTTTGTTAGAATCGTTAGGATACGAGAATTCGAATGATGTATTTCCAATCTATATTGGTGATGATCGAACTGATGAGGATGCTTTTAAGgTTTTGCGCAGTAGGGGTCAAGGAATTGGGATTCTTGTTTCTAGAGTTCCAAAAGAAACAGATGCTTCCTGTACTTTGCAAGATCCATCAGAGGTTGAGCAATTCTTGCGGCGTTTGGTGGAGTGGAAAAGATCGAGTACTGTGACTCCCACAAGTGTATAG 1110 0.445 MMTNQNVVTHEVINTLIAMAASISNSPVLPSATVPESLALLGGCWGVPHKNLVKRLEGAKVSAWIDSMRASSPTRVKSESQEKRSFILYRPSALNTFEQIICSSKGKKIVVFLDYDGTLSPIVADPDKAFMTRKMRATLKGIARHFPTAIVTGRCRDKVYSFVKLAELYYAGSHGMDITGPTKSQSPKQGNNKAVLFQPASQFLPMIDEVYKILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWAALAEKVGLVLNEYPQLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRVPKETDASCTLQDPSEVEQFLRRLVEWKRSSTVTPTSV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3088 369 Gene3D - 214 366 IPR023214 -
Ssu1g3088 369 Gene3D - 109 207 IPR023214 -
Ssu1g3088 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 363 IPR044651 GO:0004805|GO:0005992
Ssu1g3088 369 SUPERFAMILY HAD-like 110 358 IPR036412 -
Ssu1g3088 369 Pfam Trehalose-phosphatase 112 346 IPR003337 GO:0003824|GO:0005992
Ssu1g3088 369 CDD HAD_TPP 110 348 - -
Ssu1g3088 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 363 - -
Ssu1g3088 369 TIGRFAM T6PP: trehalose-phosphatase 106 356 IPR003337 GO:0003824|GO:0005992
Ssu1g3088 369 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 111 320 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3088 Ssu-Chr1 80742566 80744727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3088 105 352 Trehalose Biosynthesis Gene Families AT1G70290 25.869 3.77e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3088 K01087 - gmx:100788641 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3088 1 80742566 80744727 Ssu1g3088 1 80742566 80744727 ECH
Ssu6g2418 6 56604051 56606252 Ssu1g3088 1 80742566 80744727 PCT