Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3086 ATGGCAGCTATGATGGATTTTTACAGCAGCAcagaatttcaatttcaacttcACGCAGATCCCTTCAGGGGTGAACTAATGGAAGTTCTTGAAACTTTTATGAAAAGTCCTTCCTCAACTCGCTCTTCCTCTCCCTCCCCTTCATCCCCATGCTCGAACTCATCTCTCCCTTCTACTTCTTACTCCCCCTCTCCCAACAACTACTTCCTCTCCTCTCCCTCCCTCTCCCCTTATGGTTGCTCCACGTCGATGACCCATGTATTTGCAGACGGGTTATCCTTATCCAACAGCCAGAACCTAATAGGCTTCGGGCAGCCCACGTCCCTTCTGGGCCTCAACCACCTAACCCCATCACAGATCTCTCAGATCCAGGCCCAAATCCAGGTCCAGAGCCACCAGCAGCAGAATCACAACACCTTCAGCTTCCTCGGGTCCAAGCCCATCTCCATGAAGCACGTGGGCATGCCTCCGAAGCCCACGAAGCTGTACAGAGGGGTGAGGCAGAGGCACTGGGGAAAGTGGGTCGCGGAGATCAGACTCCCCAAGAACCGCACCAGGCTCTGGCTGGGAACCTTCGACACCGCCGAGGAAGCTGCTCTGGCGTACGACAAGGCCGCGTACAGACTCCGAGGTGACTTCGCCAGGCTCAACTTCCCCAACCTCCGACACCAGGGCTCCTCCGTCGGTGGAGACTTCGGGGAGTACAAGCCTCTTCATTCCTCAGTCGACGCCAAGCTTCAGGCCATTTGCGAAGGCCTGGCTGAGTTGCAGAAGCAGGGAAAAGCCGAGAAGCCTCAGGGTTCGTCCAAGAGGTCGCGATCCAAGGTTGCTACTCCTCCGCCGGAGAAGGTTGATTCCGACAAGGGTTTGGAGAACAACCACCCTTGCAAGGTTGAGGTTTCCTCGCCTCCGGTTACCACGGAGAGCGAGGGGTCTGCAGGTTCTTCGCCTCTTTCGGATCTGACATTTGCTGACGTCAGCGAGCCCCAGTGGGAGGTGGATTCGAATAATTTTAATCTCCATAAGTACCCCTCTTATGAGATCGATTGGGATTCTCTGTGA 1062 0.5443 MAAMMDFYSSTEFQFQLHADPFRGELMEVLETFMKSPSSTRSSSPSPSSPCSNSSLPSTSYSPSPNNYFLSSPSLSPYGCSTSMTHVFADGLSLSNSQNLIGFGQPTSLLGLNHLTPSQISQIQAQIQVQSHQQQNHNTFSFLGSKPISMKHVGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAELQKQGKAEKPQGSSKRSRSKVATPPPEKVDSDKGLENNHPCKVEVSSPPVTTESEGSAGSSPLSDLTFADVSEPQWEVDSNNFNLHKYPSYEIDWDSL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3086 353 CDD AP2 161 221 IPR001471 GO:0003700|GO:0006355
Ssu1g3086 353 MobiDBLite consensus disorder prediction 34 61 - -
Ssu1g3086 353 MobiDBLite consensus disorder prediction 264 294 - -
Ssu1g3086 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 352 - -
Ssu1g3086 353 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
Ssu1g3086 353 PRINTS Ethylene responsive element binding protein signature 185 201 IPR001471 GO:0003700|GO:0006355
Ssu1g3086 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 352 - -
Ssu1g3086 353 Gene3D AP2/ERF domain 162 220 IPR036955 GO:0003700|GO:0006355
Ssu1g3086 353 SUPERFAMILY DNA-binding domain 162 220 IPR016177 GO:0003677
Ssu1g3086 353 SMART rav1_2 162 225 IPR001471 GO:0003700|GO:0006355
Ssu1g3086 353 MobiDBLite consensus disorder prediction 299 323 - -
Ssu1g3086 353 ProSiteProfiles AP2/ERF domain profile. 162 219 IPR001471 GO:0003700|GO:0006355
Ssu1g3086 353 MobiDBLite consensus disorder prediction 257 323 - -
Ssu1g3086 353 Pfam AP2 domain 163 211 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3086 Ssu-Chr1 80703741 80704802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3086 1 353 AP2-EREBP Transcription Factor Family AT1G78080 52.800 9.17e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g3086 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3086 K09286 - gmx:100800478 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3086 1 80703741 80704802 Ssu1g3086 1 80703741 80704802 ECH
Ssu6g2416 6 56531673 56532688 Ssu1g3086 1 80703741 80704802 PCT