Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3076 ATGTCTTCAATGGGTCCTCCTGCTGATGAAAATATTGAAACAAAAGATATGGATCTGAGAAGTATGTCATTTTCAAATGGTCAGGTACCGCATGTCCACAAAGTGGCAATTCCTCCAAGACAGAACCTCTTCAAGGAATTCCAAGCCACTATAAAAGAAACATTCTTTGCTGATGATCCTCTAAGATCCTTCAAAGATCAACCTAAATCAAGGAAGCTCCTCCTCGGTATTGAGGCCATATTCCCAATACTTAATTGGGGGAGaagttacaattttaaaaaatttagaggggATATAATATCTGGTCTCACTATTGCTAGTCTTTGCATTCCTCAGGATATTGGATACGCCAAGCTTGCACATTTGTCTCCACAGTATGGACTGTACTCCAGTTTTGTTCCACCACTAATTTATGCTGTCATGGGTAGCTCTCGGGATATTGCTATAGGACCGGTGGCAGTGGTTTCTCTTTTGCTGGGGACCTTACTTAGTAATGAGATTAATCCTAATACACATGCAGAAGAATATCGGCGACTTGCTTTTACAGCCACTTTTTTTGCTGGGATTACTCAAGCAACGCTTGGTATTCTTAGgTTAGGATTCTTGATTGACTTCCTATCCCATGCTGCTGTTGTCGGTTTTATGGGGGGTGCTGCTATCACAATTGCCCTTCAACAGCTTAAGGGTTTCCTTGGCATTAAAACTAAACAGTTCACAACGAAGACTGGTATTGTCCCTGTGCTGCATTCAGTATTCTCAACAGCACATCATGGATGGAACTGGCAAACTATAGTCATCGGATCTAGCTTTTTGGGCTTTCTTCTGGTCACCAAATATATTggaaagaaaaacaagagaTTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCCGTTATTTTGTCCACTTTTTTTGTATTCATAACCCGTGCAGATAAGCAAGGAGTAGAAATTGTAAGACGCATAGAAAAAGGAATCAATCCATCATCTGTTAAAGAACTTTATTTAAGCGGTGAATACCTTggaaaagcttttaaaattggCATCGTGGCAGGCATGATAGCATTGACTGAAGCCACAGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTGGCATTAGGAGCAATGAATGTTGTTGGTTCCATGACTTCGTGTTATGTGGCAACTGGTTCTTTCTCTCGGTCAGCGGTAAATTTCATGGCTGGATGCCAAACTGCAGTCTCTAATATTGTGATGTCAGCAGTTGTGTTCTTAACCCTGGAATTCATCACTCCTCTTTTTAAGTACACTCCAAATGCTATTCTTTCTGCCATCATCATTTCTGCTGTCATCAACCTTGTAGACTATGAGGCAGCAATTTTGATTTGGAAGatagataaaattgattttgttgcttGCATGGGTGCATTCTTTGGGGTTGTTTTTGTCTCGGTTGAGATAGGACTTCTAATTGCTGTCTCTATATCCTTTGCAAAGATCCTACTACAAGTCACAAGGCCCCGAACTGCAATTCTGGGAAAGATTCCTAGGACTACTGTCTATAGAAACATCCAACAATATCCAGAAGCTAGTAAGGTTCCAGGTGTATTGATTGTAAGAGTCGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGACATTAAGATGGCTTATGGATGAAGAAGAACAAGTGAAAGGAGACTACCGCAcaaaaatccagtttttgataGTTGAAATGTCACCCGTTACTGACATTGATACAAGTGGCATCCAAGCCTTTGAAGAGTTACACAGAAATCTTGAGAAGAGGGGTGTTGAGCTTGTTCTGGCAAATCCTGGCCCAGCAGTGACAGACAAGCTTTACGCATCCAATTTTGCGAACACGATTGGCGAGGACAAGATCTTCCTCACTGTTGCGGAGGCTGTTGCATACTGTTCTCCAAAGGTGGTTGAGGACCCATGA 1983 0.3944 MSSMGPPADENIETKDMDLRSMSFSNGQVPHVHKVAIPPRQNLFKEFQATIKETFFADDPLRSFKDQPKSRKLLLGIEAIFPILNWGRSYNFKKFRGDIISGLTIASLCIPQDIGYAKLAHLSPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLSNEINPNTHAEEYRRLAFTATFFAGITQATLGILRLGFLIDFLSHAAVVGFMGGAAITIALQQLKGFLGIKTKQFTTKTGIVPVLHSVFSTAHHGWNWQTIVIGSSFLGFLLVTKYIGKKNKRFFWVPAIAPLISVILSTFFVFITRADKQGVEIVRRIEKGINPSSVKELYLSGEYLGKAFKIGIVAGMIALTEATAIGRTFASMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCQTAVSNIVMSAVVFLTLEFITPLFKYTPNAILSAIIISAVINLVDYEAAILIWKIDKIDFVACMGAFFGVVFVSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEASKVPGVLIVRVDSAIYFSNSNYVKERTLRWLMDEEEQVKGDYRTKIQFLIVEMSPVTDIDTSGIQAFEELHRNLEKRGVELVLANPGPAVTDKLYASNFANTIGEDKIFLTVAEAVAYCSPKVVEDP 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3076 660 Pfam Sulfate permease family 95 477 IPR011547 GO:0016021
Ssu1g3076 660 Gene3D STAS domain 509 656 IPR036513 -
Ssu1g3076 660 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
Ssu1g3076 660 TIGRFAM sulP: sulfate permease 82 648 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu1g3076 660 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 15 660 - -
Ssu1g3076 660 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Ssu1g3076 660 PANTHER SULFATE TRANSPORTER 15 660 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu1g3076 660 Pfam STAS domain 530 648 IPR002645 -
Ssu1g3076 660 SUPERFAMILY SpoIIaa-like 531 653 IPR036513 -
Ssu1g3076 660 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3076 Ssu-Chr1 80381338 80385390 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3076 1 659 Inorganic Solute Cotransporters AT1G22150 73.596 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3076 K17470 - gmx:100804208 1173.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3076 1 80381338 80385390 Ssu1g3076 1 80381338 80385390 ECH
Ssu6g2408 6 56107752 56112546 Ssu1g3076 1 80381338 80385390 PCT