Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3074 ATGAGTTCAGCTCCCAGTGATGCTTCCAGCATGAGAGTCAGAGAGCTGCGGCACTTTCATCTTGAGGATACTAGTCAAGTAGAGAGGTCCCAGTGGGTGCTGAATCCTCCCAATCCACCACCTCTATGGATCAAGCTACTTAGTCCACTGAAGAAAACCGTGTTCTTTTTTTCATCTAAGAAGAAACCTTGCCTTGGACATGCTGTTTCATTCTTGGAGAGTTTATTCCCAATCCTTAGCTGGTTCAAAAATTACAAAGCCTCCAAGTTTAAAGATGATTTGCTAGCAGGTTTAACTCTTGCCAGCCTCAGCATACCTCAGAGTATAGGATATGCTAATTTGGCAAAACTTGATCCTCAATATGGACTGTACACCAGTGTTGTTCCTCCTCTTATCTATGCTCTGATGGGGAGTTCAAGAGAAATTGCAATTGGACCGGTAGCTGTAGTGTCATTGCTGCTATCCTCTTTGGTCCCAAAAGTGGTAGATCCTGCTATTGATCCTGATGGCTACAGAAATGTTGTCTTTACTGTGACCTTATTTGCTGGAATCTTTCAAGCTACATTCGGTATTTTCAGGTTGGGCTTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTTGGGTTCATGGCAGGCGCAGCCATCATTATTGGTCTTCAGCAGCTCAAGGGGTTGCTGGGGATTAATCACTTTACCACCAAAACTGATGCAATATCCGTGTTGGAATCTGTTTATAAGTCACTCCATCAACAAATTACATCTGGAGAAAAATGGTACCCTCTGAATTTTGTCATCGGGTGTTCATTCCtgattttccttttaattgCCCGATTTGTTGgcagaagaaacaaaaaacttttCTGGTTGCCTGCTATTGCTCCTCTTCTATCAGTTATATTATCAACTTTAATTGTGTATTTGTCGAAAGCTGACAAGAACGGGGTTAATATAATAAAGCATGTGAAAAGAGGGTTGAATCCAAGTTCAGCTCACCAGTTACAATTCCGTGGTCAACATGTTGGACAAGCAGCTAAAATTGGATTGATCTCTGCTGTTATTGCTCTTACCGAAGCAATAGCAGTTGGTCGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGGAACAAAGAAATGTTAGCAATGGGCTGCATGAACATTGCGGGATCTCTCTCTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTAAATTTCAGTGCAGGATGTCAAACATCAATATCAAATATTGTGATGGCCATTACTGTGGTTTTGTGTCTAGAATTGTTTACAAGGCTCCTATACTACACTCCTATGGCCATACTTGCTTCTATCATCCTCTCTGCACTTCCTGGATTAATTGACATAAGTGAAGCTTGCTATATTTGGAAGGTTGACAAATTCGACTTTCTTGCCTGCATTGGTGCCTTCTTCGGCGTCTTGTTTGTATCGGTAGAAATTGGTCTTCTTGTTGCAGTGTCAATCTCGTTTGCAAAAATACTAATACAATCAATTCGACCTGGGATAGAGGTTTTAGGTAGAGTTCCAAGAACAGAAGCCTTCTGCGATGTTAGTCAATATCCCATAGCCATAAGCACTCCTGGCATCTTGGTGATTCGCATAAGCTCTGGCTCACTCTGCTTTGCTAATGCTAATTTTGTGAGAGAAAGAATACTGAAGTGGGTCACGGAAGAAGAAGACGAACTTAAGGGAAGGGTCCAGGCTATAATCTTGGACATGAGCAACCTGATGAATATTGATACCTCTGGGATTCTAGCACTGGAGGAACTGCACAAGAGGCTGCTTTCGCGTGGCGTACAATTGGCTTTGGTCAACCCAAGGTGGCTAGTAATTCACAAGCTAAAAGTGGCACGCTTTGTGGataaaatcggaaaggaatggGTTTTCCTTACTGTTGCTGAAGCCTTAGACGCATGTCTGTCTTCTAAATTCCCTGACCCATAA 1971 0.414 MSSAPSDASSMRVRELRHFHLEDTSQVERSQWVLNPPNPPPLWIKLLSPLKKTVFFFSSKKKPCLGHAVSFLESLFPILSWFKNYKASKFKDDLLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYALMGSSREIAIGPVAVVSLLLSSLVPKVVDPAIDPDGYRNVVFTVTLFAGIFQATFGIFRLGFLVDFLSHAALVGFMAGAAIIIGLQQLKGLLGINHFTTKTDAISVLESVYKSLHQQITSGEKWYPLNFVIGCSFLIFLLIARFVGRRNKKLFWLPAIAPLLSVILSTLIVYLSKADKNGVNIIKHVKRGLNPSSAHQLQFRGQHVGQAAKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSLSSCYVATGSFSRTAVNFSAGCQTSISNIVMAITVVLCLELFTRLLYYTPMAILASIILSALPGLIDISEACYIWKVDKFDFLACIGAFFGVLFVSVEIGLLVAVSISFAKILIQSIRPGIEVLGRVPRTEAFCDVSQYPIAISTPGILVIRISSGSLCFANANFVRERILKWVTEEEDELKGRVQAIILDMSNLMNIDTSGILALEELHKRLLSRGVQLALVNPRWLVIHKLKVARFVDKIGKEWVFLTVAEALDACLSSKFPDP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3074 656 PANTHER SULFATE TRANSPORTER 17 655 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu1g3074 656 Pfam Sulfate permease family 90 476 IPR011547 GO:0016021
Ssu1g3074 656 SUPERFAMILY SpoIIaa-like 533 648 IPR036513 -
Ssu1g3074 656 TIGRFAM sulP: sulfate permease 77 644 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu1g3074 656 Gene3D STAS domain 508 651 IPR036513 -
Ssu1g3074 656 Pfam STAS domain 529 644 IPR002645 -
Ssu1g3074 656 ProSitePatterns SLC26A transporters signature. 119 140 IPR018045 GO:0008271|GO:0008272
Ssu1g3074 656 CDD STAS_SulP_like_sulfate_transporter 529 641 - -
Ssu1g3074 656 ProSiteProfiles STAS domain profile. 545 648 IPR002645 -
Ssu1g3074 656 PANTHER SLC26A/SULP TRANSPORTER-RELATED 17 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3074 Ssu-Chr1 80331808 80336033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3074 25 652 Inorganic Solute Cotransporters AT5G10180 63.850 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3074 K17469 - gmx:100805269 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3074 1 80331808 80336033 Ssu1g3074 1 80331808 80336033 ECH
Ssu6g2407 6 56057135 56061945 Ssu1g3074 1 80331808 80336033 PCT