Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3072 atgtcGTCGTCGAATTCGCCGTGCGCAGCGTGCAAGATTCAGCGTCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAGCGGTTCGCGTACGTGCACAAGGTGTTCGGCGCGAGCAACGTGGCGAAGCTTCTGAACGAGCTGAACGCGGCGCAGCGGGAGGACGCGGTGAAGTCCCTCGCCTACGAGGCGGAGGCGCGTCTGCGGGACCCGGTGTACGGGTGCGTGGGCCTCATCTCCATCCTCCAGCACAGGCTCAAGCAGTTGCAGACCGAACTCAACCACGCCAAGAAGGAACTCGCCTCCTACATCGGACCCCACGCCATGCTCCCTCCCCCTCCCCCTCCCCTCCTCCGCCGCCTcgcactttctctctcttcccctTCAAAACCGCGCCTCCGCCGCATGATGTTTTCGGCTTCCACGACGAAGGAGCTTCCGCTTCTCACGCCGCCTTCAACCACCTCTCCGTGA 495 0.6141 MSSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQTELNHAKKELASYIGPHAMLPPPPPPLLRRLALSLSSPSKPRLRRMMFSASTTKELPLLTPPSTTSP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3072 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 119 - -
Ssu1g3072 164 Coils Coil 86 106 - -
Ssu1g3072 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 119 - -
Ssu1g3072 164 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Ssu1g3072 164 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3072 Ssu-Chr1 80239903 80240397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3072 1 118 AS2 family AT5G66870 82.203 8.98e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu1g3072 LOB 1.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3072 - - ccaj:109810786 235.728