Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3063 ATGGACATATACGAGCCATTCCAGCAAGTTAGCATGTGGGGGGACAACTTTAAAGTTGATGGCGGCCTGAATTCAGCTGCTCCCCCAATGTTAATGGTTGATACCAGTATGGAGACCAAGTCTGAGTATATTCCTCAGGAATCAAGAGAGCCCTCTGGAGCTGATCAAGAGACCACAGATAAAGATGTTAATAAGATGCTAAGACGTCTAGCTCAGAATCGAGAGGCTGCTCGGAAAAGTAGGCTGAAGAAAAAGGCTTATGTTAAACAATTAGAATCAAGCCGTTTGAAGCTCATGCAATTGGAGCTGGAAATTGGGAAAGCAAGAAATCAGGGTCTGTACATGGGCACTGCATTAGATGCCGGCTATATAGGATCGTCAGAAACAATAAACCCAGGGATTAAtgcttttgaaattgaatatgGACAATGGGTTGAGGAGCAACAAAGGCAAAGTGAAGAACTTAGACATGCATTTCAAACGCATGCACCTGATGTACAGCTTCATGCATTGGTTCAGAGTGTCTTAAACCATTACTCAAATCTTTTCAGAATGAAAGCAGATGCTGCAAAGGTTGATGTGCTCTATTTACTCTCTGGTGTTTGGAAAGCGTCAGTGGAGCGCATTTTCCTTTGGATTGGAGGCTCCCGTCCATCACAGCTCTTAAACATCATCTTGCCACAACTTGAGCCTTTGACTGAGCAACAAATTGTTCGAATTAACAGCATCTGCCTATCATCTCAGCAAGCTGAAGATGCTCTTTCACAAGGATTGGAAAAACTTCAGCAGAGTTTGGTCCTCGACATGGCAGTTGATCCATTCGGTGCAGGAAACTTGGGACTTCAGATGACTCTTGCTATGGAGAAATTTGAGGCACTAGAAGGTTTTATAAATCAGGCAGATCACCTCAGGCAACAAACTCTGCTGCACATGTCACGCGTCCTGTCAACTCACCAAGCTGCTCGGGGCTTGCTGGCTCTAGGGGAATACTTTCACCGTCTTCGCACTCTTTGCTCTCTTTGGGCTGCTCGTTCCTATGATCTTGCCTAG 1050 0.4429 MDIYEPFQQVSMWGDNFKVDGGLNSAAPPMLMVDTSMETKSEYIPQESREPSGADQETTDKDVNKMLRRLAQNREAARKSRLKKKAYVKQLESSRLKLMQLELEIGKARNQGLYMGTALDAGYIGSSETINPGINAFEIEYGQWVEEQQRQSEELRHAFQTHAPDVQLHALVQSVLNHYSNLFRMKADAAKVDVLYLLSGVWKASVERIFLWIGGSRPSQLLNIILPQLEPLTEQQIVRINSICLSSQQAEDALSQGLEKLQQSLVLDMAVDPFGAGNLGLQMTLAMEKFEALEGFINQADHLRQQTLLHMSRVLSTHQAARGLLALGEYFHRLRTLCSLWAARSYDLA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3063 349 Gene3D - 64 115 - -
Ssu1g3063 349 Coils Coil 84 111 - -
Ssu1g3063 349 MobiDBLite consensus disorder prediction 38 60 - -
Ssu1g3063 349 SMART brlzneu 60 121 IPR004827 GO:0003700|GO:0006355
Ssu1g3063 349 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
Ssu1g3063 349 ProSiteProfiles DOG1 domain profile. 134 344 IPR025422 GO:0006351|GO:0043565
Ssu1g3063 349 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 346 - -
Ssu1g3063 349 PANTHER TRANSCRIPTION FACTOR TGA9 1 346 - -
Ssu1g3063 349 Pfam Seed dormancy control 153 226 IPR025422 GO:0006351|GO:0043565
Ssu1g3063 349 Pfam bZIP transcription factor 65 93 IPR004827 GO:0003700|GO:0006355
Ssu1g3063 349 SUPERFAMILY Leucine zipper domain 65 98 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3063 Ssu-Chr1 80053056 80056716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3063 1 344 Calmodulin-binding Proteins AT1G22070 54.017 1.41e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu1g3063 DOG1 2.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3063 K14431 - gmx:100794268 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3063 1 80053056 80056716 Ssu1g3063 1 80053056 80056716 ECH
Ssu6g2391 6 55596236 55600268 Ssu1g3063 1 80053056 80056716 PCT