Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3056 ATGCCTCGCCAAGCACCGCCGCCGCCGTCGCAGCCCTGCCCTCTGGACCCGAAACTCTGGCGGGCGTGCGCCGGAGCCTCCGTGGAAATCCCCACGCTCCATTCTAGGGTTTACTACTTCCCGCAGGGGCACTTCGATCAAGCCTCTTCCCCTCCGCGCAACCTCTCCCCGCTCCTTCTCGCGAAACCCTTCGCCGTCTGCCGCGTCGCCTCCGTCCAATTCCTCGCCGATCCCCTCACCGACGAGGTTTTCGCGAAGCTGATTCTCCACCCTATCGCCGATTACTCCGCCGCGGGACCTTCCGTCGCCGTTCCTCCTCCGCCGCAGAGCGACGACAGCAATAAGATTGTCTCCTTCGCGAAGATTCTCACGCCCTCGGATGCCAACAACGGCGGCGGGTTTTCCGTGCCGAGGTTCTGCGCGGACTCCATCTTCCCGCCGCTGAACTTCCAGGCGGACCCGCCGGTGCAGAACCTCTTTATCACCGACGTGCACGGCTCCGTCTGGGAGTTCCGCCACATCTACCGCGGGACGCCGCGGCGGCACCTGCTCACCACCGGCTGGAGCACGTTCGTCAACTGCAAGAAGCTCGTCGCCGGCGACTCCGTCGTCTTCATGAAGAACTCCGGGGGGAACATGTTCGTCGGGATTCGCCGCGCCACGCGCTTTGCCGCCGCGAAGCGCGGCGGCGACGCCGGGAAGTGGCGCCTGAACATTAGAAACAGGGccgaggaggaggaggaagaggaagaggcgAAGGAGGTCTTCTCGAGGGACGGGAAGGGGAAGCTGTCGGCGAAGGTGGTTGCGGAGGCGGCGGAATTGGCGGCGCGGAACATGCCGtttgaggttgtttattatCCCAAGGCTGGTTGGTCGGAGTTCGTGGTGAAAACTGAGGCGGTGGATGAAGCAATGAGCGTCGCGTGGAGCCCTGGAATGAGAGTGAAGATGGCTGTGGAGACCGATGATTCGTCCAGGATGACGTGGTTTCAGGGTACGGTGTCTTCTGTCTCTTTTCACGATAACGACCAATGGCGCGGTTCTCCTTGGCGTATGCTTCAGATTACATGGGATGAACCTGAAGTGTTGCAGAATGCAAAGTGGGTCAGCCCTTGGCAGGTGGAACTTGTTTCCACCACACCTGCACTTCATTCAGCATTCCCCCCAACAAAAAAGTTTAGAGCTGCTCATGGTTCTGGGGTGTTTAGTGATGGAGAGGGAAACCCCTTTTCTATGACAGGATTCACTAATTCAGCAATGGGACACCTGAATCAGACATTGTTGAATTATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTACTAACTATCCAAGTGATATCTCTCGTCTGTGTGTGGGTAATTACTTTGATAACAGCACGGTTCCAAGGCTGAAAACTTTGTCAACAGAGCTAAATGTTGGCAGCTCTCAATCTGATGACTTGTCACCTGATAGCCGTAGTAGTCTCCATTCCTGTGGCACAGAACTTGTTGGGAATCACAACTGCAACTCAACAAAACCTGGATCTGTTTCATTTCAGCTATTTGGTGCAGTCATTCAAACAGAACGGCCTGTTGAAAATGGTTTCAACAGTACTGGTTGCACAGGAGCTGCTGGCAGGAATTGCTGCAACAAAACTGATGGCAAAGTCAACCCACCGGATGATTCTTTAACTACTAAACTGCTTGACAAGCTTGATGACCAATGCCAAAGTACCTCAACAGTTGAGGATTGTTTGTGA 1773 0.5403 MPRQAPPPPSQPCPLDPKLWRACAGASVEIPTLHSRVYYFPQGHFDQASSPPRNLSPLLLAKPFAVCRVASVQFLADPLTDEVFAKLILHPIADYSAAGPSVAVPPPPQSDDSNKIVSFAKILTPSDANNGGGFSVPRFCADSIFPPLNFQADPPVQNLFITDVHGSVWEFRHIYRGTPRRHLLTTGWSTFVNCKKLVAGDSVVFMKNSGGNMFVGIRRATRFAAAKRGGDAGKWRLNIRNRAEEEEEEEEAKEVFSRDGKGKLSAKVVAEAAELAARNMPFEVVYYPKAGWSEFVVKTEAVDEAMSVAWSPGMRVKMAVETDDSSRMTWFQGTVSSVSFHDNDQWRGSPWRMLQITWDEPEVLQNAKWVSPWQVELVSTTPALHSAFPPTKKFRAAHGSGVFSDGEGNPFSMTGFTNSAMGHLNQTLLNYGTFPAGMQGARHDVFSASSFTNYPSDISRLCVGNYFDNSTVPRLKTLSTELNVGSSQSDDLSPDSRSSLHSCGTELVGNHNCNSTKPGSVSFQLFGAVIQTERPVENGFNSTGCTGAAGRNCCNKTDGKVNPPDDSLTTKLLDKLDDQCQSTSTVEDCL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3056 590 Gene3D - 310 383 - -
Ssu1g3056 590 SUPERFAMILY DNA-binding pseudobarrel domain 113 224 IPR015300 -
Ssu1g3056 590 Gene3D - 116 221 IPR015300 -
Ssu1g3056 590 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu1g3056 590 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Ssu1g3056 590 SMART B3_2 119 221 IPR003340 GO:0003677
Ssu1g3056 590 CDD B3_DNA 118 219 IPR003340 GO:0003677
Ssu1g3056 590 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Ssu1g3056 590 PANTHER AUXIN RESPONSE FACTOR 8 589 - -
Ssu1g3056 590 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 589 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3056 Ssu-Chr1 79995255 79998395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3056 15 545 B3 DNA Binding Superfamily AT1G77850 50.000 6.94e-179 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu1g3056 B3 4.9e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3056 1 79995255 79998395 Ssu1g3056 1 79995255 79998395 ECH