Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3052 ATGAATCCTTGTGTTCTTTGCCCAAAGAAGGGTGGCGCATTAAAACCAGTTAATAGCAGCATGGAAGGTGCTGGGTCTGTCCCGTTTGTGCACTTGTTTTGCTCTCTGTGGATGCCTGAGGTTTATGTAGATGATTTGAAGAAGATGGAACCTGTTATGAATGTGGGAGAAATCAAGGAAACCCGGAAGAAATTGGTGTGTAGTGTTTGCAAAGTGAAATGTGGTTCATGTGTTCGGTGTAGCCATGGAAGCTGCAGAACTTCTTTCCATCCTATATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCTGATCTACCAGAGAAATTTTCAGAAGCCAATGGCCTTCCAGTGACATTGCCAGTGAGCGGTGAACACAACTTGAAAGATTGCAGGAATGGAGGATTGGCCTCTGATAGTAGTCTGGACAAATTGAACCATAATGATGAACCACCAGATGGAGGATTATCTGATTGCAGGTTAAGTGTTCACGACATGTTGGGATGTGGTGCTGTGCCCCAACAAAATGTTGGAGTGGTAGGGAGAGCCAATGAGAATGTTGATGCATCTGACCCTCTCAGTTTTGCACTTGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTGATGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCTGATACATTAACTGCAAATACCAATGAAGCTTATATGGCCCCTGATGTCCGACACAAAATATTCAATTGGCTAAAAGCCCATGTATATACTAGTACATTTCAGAAGggtttaaaagttaaattcaaACCAGCCAATGCATCCAAAAATGATAATGGAGCCACAGATGGTTTTGATACTTTACCAATATCAGATTTGGGTTTGCTGGATCCTGTTGCTGTTAAGTCAGTTCCACCAAGGAGAAGAACCATCAGTAACATTAGGATTTTGAAGGATAATAAAATGATGTGTTCATCTGAGGGGGTTACTGGTGAGAATGGGATGCCTGTGGACATGTGCAGAGTAGGTCAGTCTGGCTGTGACAATCCAACAAGTTCCAATGAAGCATCCATTCCCAATGCAACtgaaatgAACTTAACCAAGTCTGAGGATATTTTTCATGAAGTTCAAGGCAATGCTGATAAACATTACAAATCCTGCTTATCTGGATGCGTTTCAGAAGACAAGTCTACTGCTTGTTTGCAAAATGCTTCTATGCTTTCCGATCAGCACTGTCTTGTTCATTCTGCTGCAGAACCACCTGATTCTGGTTTCATAAAGAAGGATGCAATCTCTAGTTACATTCATCCATACATCAACAAGAAATTGCTGCAGATTTGTGATGGTGTGCCCTCGGAGGACATTATATGTTTAAGTGATGAGGGAAATTCTTCTTTGGTTGAATCCTTTGGGGCTAGTGGCTGCTCAAGTAGCCAAAATCAGAACTTAACTTGCATTGACATTTCAAAGCCTGATGAAGTAAATATGGAGCAGTTGGCTAGGGCTAGAAAAATGGGACTTTTGGAATTTTCTCCACAAGATGAATTGGAGGGGGAACTTGTTTATTTTCAGTATAGGTTATTGCAGAATGCAGTTGCAAAAAAGAGGCATATGGATAACTTAATCTACAGTGTTGCCAAGAGTTTGCCACACGAGATTGATAAGGCACATCAACAAAGATGGGATGATGTTACAGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAgggtagaaaagaaaaaaagcacaAGGAAGCGCAGGCAGTGTTGGCTGCTGCAACTGCTGCTGCGGCAGCATCTACTAGGGTTTCTTTCCGGAAAGACGCCTTAGATGGATCTATGCAACAGGAGAATTTGTTAAAATTGGATGCTCTAAATGGAAGGACCGGTGCTTGTTCCCAGCCAATGCCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAACTTCATCAGAGAAATATTCGGATTTTTGCATTCCAATCTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGCAGACGATCAGAGACTATGTTAAACCCTATCCTTGTCTGCTCTGGTTGCAAGGTTTCAGTGCACTTGGATTGCTATCGTAGTGTGAGAGAAACAACGGGTCCATGGTATTGTGAGTTATGTGAAGATTTGTCAACTAGAAGCTCTGGGGCATCTGCTATCAATTTCTGGGAGAAGCCTTGTATTGTTGCAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGGTTCATGCTTTCTGTGCTGAGTGGGTTTTTGAGTCTACATTCAAAAGAGGACAAATAGATGCTGTTGAAGGAATGGAAACTGTGCCAAAAGGAGTTGACATTTGTTGCATCTGCCACCGCAAGCATGGCGTATGCATGAAGTGTTGCTATGGCCACTGTCAGACTACATTCCATCCATTGTGTGCTAGAAGTGCTGGTTTGTACATGAATGTGAGGACTGCTGGTGGCAAGGCTCAACACAAAGCTTACTGTGAAAAACATAGTTTGGAGCAGAAGGCAAAGGCTGAAACTCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTTAAACGTGAAAAAATAAAGCGGGAATTGGTACTATGTTCACATGACATACTCGCCTTTAAAAGAGATCATGTTGCCAGATCTGTGCTGGTTCATAGTCCTTTCATCCTTCCAGATGGTAGTTCAGAATCAGCTACAACATCCCTTAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCACTCCAGAGATCAGATGATGTTACTGTGGACAGTTCAGTTTCTGATAAGCACCGTGTCAGAGTTGCCATATCTATGGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCTCAAAGTCGATATAACCACAAGATTCCAGAAAGAACGGAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGCATCACGTAATATTTCGGATGAGGGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAGACATTCGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCAAATGACAAGCACTCTAACGAGGATGTATATGCTAGTGGACCAGTGGAGCATGACAGGTAG 3288 0.4151 MNPCVLCPKKGGALKPVNSSMEGAGSVPFVHLFCSLWMPEVYVDDLKKMEPVMNVGEIKETRKKLVCSVCKVKCGSCVRCSHGSCRTSFHPICAREARHRMEVWAKYGNDNVELRAFCLKHSDLPEKFSEANGLPVTLPVSGEHNLKDCRNGGLASDSSLDKLNHNDEPPDGGLSDCRLSVHDMLGCGAVPQQNVGVVGRANENVDASDPLSFALVLKKLIDRGKVDVKDVALEIGISPDTLTANTNEAYMAPDVRHKIFNWLKAHVYTSTFQKGLKVKFKPANASKNDNGATDGFDTLPISDLGLLDPVAVKSVPPRRRTISNIRILKDNKMMCSSEGVTGENGMPVDMCRVGQSGCDNPTSSNEASIPNATEMNLTKSEDIFHEVQGNADKHYKSCLSGCVSEDKSTACLQNASMLSDQHCLVHSAAEPPDSGFIKKDAISSYIHPYINKKLLQICDGVPSEDIICLSDEGNSSLVESFGASGCSSSQNQNLTCIDISKPDEVNMEQLARARKMGLLEFSPQDELEGELVYFQYRLLQNAVAKKRHMDNLIYSVAKSLPHEIDKAHQQRWDDVTVNQYLRDLREAKKQGRKEKKHKEAQAVLAAATAAAAASTRVSFRKDALDGSMQQENLLKLDALNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSDFCIPISDFSKEQCKSCDICRRSETMLNPILVCSGCKVSVHLDCYRSVRETTGPWYCELCEDLSTRSSGASAINFWEKPCIVAECALCGGTTGAFRKSSDGQWVHAFCAEWVFESTFKRGQIDAVEGMETVPKGVDICCICHRKHGVCMKCCYGHCQTTFHPLCARSAGLYMNVRTAGGKAQHKAYCEKHSLEQKAKAETQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPLQRSDDVTVDSSVSDKHRVRVAISMDTDPKLDDDCSTSQSRYNHKIPERTEFSGKKIPHRAAASRNISDEGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKHSNEDVYASGPVEHDR 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3052 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 740 IPR013083 -
Ssu1g3052 1095 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 2 124 - -
Ssu1g3052 1095 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 451 1085 - -
Ssu1g3052 1095 Pfam PHD-zinc-finger like domain 755 861 - -
Ssu1g3052 1095 Pfam PHD-zinc-finger like domain 3 121 - -
Ssu1g3052 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 753 863 IPR013083 -
Ssu1g3052 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 124 IPR013083 -
Ssu1g3052 1095 ProSiteProfiles Extended PHD (ePHD) domain profile. 1 122 IPR034732 -
Ssu1g3052 1095 PANTHER PHD FINGER PROTEINS 2 124 - -
Ssu1g3052 1095 PANTHER PHD FINGER PROTEINS 451 1085 - -
Ssu1g3052 1095 SMART PHD_3 66 122 IPR001965 -
Ssu1g3052 1095 SMART PHD_3 687 732 IPR001965 -
Ssu1g3052 1095 SMART PHD_3 808 862 IPR001965 -
Ssu1g3052 1095 Coils Coil 581 601 - -
Ssu1g3052 1095 MobiDBLite consensus disorder prediction 1017 1040 - -
Ssu1g3052 1095 MobiDBLite consensus disorder prediction 940 967 - -
Ssu1g3052 1095 Pfam PHD-finger 699 732 - -
Ssu1g3052 1095 ProSiteProfiles Extended PHD (ePHD) domain profile. 753 862 IPR034732 -
Ssu1g3052 1095 ProSiteProfiles Zinc finger PHD-type profile. 685 734 IPR019787 -
Ssu1g3052 1095 SUPERFAMILY FYVE/PHD zinc finger 677 732 IPR011011 -
Ssu1g3052 1095 CDD ePHD 756 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3052 Ssu-Chr1 79864577 79876096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3052 688 876 C2H2 Transcription Factor Family AT3G14740 27.805 8.25e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu1g3052 zf-HC5HC2H_2 2.9e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3052 - - gmx:100775631 1922.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3052 1 79864577 79876096 Ssu1g3052 1 79864577 79876096 ECH